Click here to switch to the map view.

The map label for this gene is insD1 [C]

Identifier: 82546647

GI number: 82546647

Start: 4401705

End: 4402226

Strand: Reverse

Name: insD1 [C]

Synonym: SBO_4350

Alternate gene names: 82546647

Gene position: 4402226-4401705 (Counterclockwise)

Preceding gene: 82546648

Following gene: 82546646

Centisome position: 97.4

GC content: 56.7

Gene sequence:

>522_bases
GTGTCGCGTGCGCAGTTGCACGTCATTCTCAGACGAACCGATGACTGGATGGATGGCCGCCGCAGTCGTCACACTGATGA
TACGGATGTGCTTCTCCGTATACACCATGTTATCGGAGAGCTGCCCACGTATGGTTATCGTCGGGTATGGGCGCTGCTTC
GCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTG
CTTGAGCGAAAACCTGCTGTACCGCCATCGAAACGGGCACATACAGGCAGAGTGGCCGTGAAAGAAAGCAATCAGCGATG
GTGCTCTGACGGGTTCGAGTTCTGCTGTGATAACGGAGAGAGACTGCGTGTCACGTTCGCGCTGGACTGCTGTGATCGTG
AGGCACTGCACTGGGCGGTGACTACCGGCGGCTCAACAGTGAAACAGTACTGGACGTCATGCTGGGTGCGGTGGAACGCC
GCTTCGGCAACGATCTTCCGTCGTCTCCAGTGGAGTGGCTGA

Upstream 100 bases:

>100_bases
TCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTTATTGCCCGGGGATGGGGAGTAAGCT
TAGTCAGCCGTTGTCTCCGG

Downstream 100 bases:

>100_bases
CGGATAATGGTTCATGCTACCGGGCTAATGAAACACGCCAGTTCGCCCGGATGTTGGGACTTGAACCGAAGAACACGGCG
GTGCGGAGTCCGGAGAGTAA

Product: IS2 ORF2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 172

Protein sequence:

>173_residues
MSRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRIMRQNALL
LERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTGGSTVKQYWTSCWVRWNA
ASATIFRRLQWSG

Sequences:

>Translated_173_residues
MSRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRIMRQNALL
LERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTGGSTVKQYWTSCWVRWNA
ASATIFRRLQWSG
>Mature_172_residues
SRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRIMRQNALLL
ERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTGGSTVKQYWTSCWVRWNAA
SATIFRRLQWSG

Specific function: Involved in the transposition of the insertion sequence is2 [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1790724, Length=144, Percent_Identity=99.3055555555556, Blast_Score=301, Evalue=2e-83,
Organism=Escherichia coli, GI1789424, Length=144, Percent_Identity=99.3055555555556, Blast_Score=301, Evalue=2e-83,
Organism=Escherichia coli, GI1789224, Length=144, Percent_Identity=99.3055555555556, Blast_Score=301, Evalue=2e-83,
Organism=Escherichia coli, GI1788305, Length=144, Percent_Identity=99.3055555555556, Blast_Score=301, Evalue=2e-83,
Organism=Escherichia coli, GI1787669, Length=144, Percent_Identity=99.3055555555556, Blast_Score=301, Evalue=2e-83,
Organism=Escherichia coli, GI1786558, Length=144, Percent_Identity=99.3055555555556, Blast_Score=301, Evalue=2e-83,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR001584
- InterPro:   IPR012337
- InterPro:   IPR002514 [H]

Pfam domain/function: PF00665 rve; PF01527 Transposase_8 [H]

EC number: NA

Molecular weight: Translated: 20198; Mature: 20067

Theoretical pI: Translated: 10.36; Mature: 10.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELD
CCCCEEEEEEECCCCHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
GMPAINAKRVYRIMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGE
CCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCC
RLRVTFALDCCDREALHWAVTTGGSTVKQYWTSCWVRWNAASATIFRRLQWSG
EEEEEEEEECCCCCCEEEEEECCCHHHHHHHHHHEEEECCHHHHHHHHHHCCC
>Mature Secondary Structure 
SRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELD
CCCEEEEEEECCCCHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
GMPAINAKRVYRIMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGE
CCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCC
RLRVTFALDCCDREALHWAVTTGGSTVKQYWTSCWVRWNAASATIFRRLQWSG
EEEEEEEEECCCCCCEEEEEECCCHHHHHHHHHHEEEECCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA