Click here to switch to the map view.

The map label for this gene is insD1 [C]

Identifier: 82546646

GI number: 82546646

Start: 4401388

End: 4401717

Strand: Reverse

Name: insD1 [C]

Synonym: SBO_4349

Alternate gene names: 82546646

Gene position: 4401717-4401388 (Counterclockwise)

Preceding gene: 82546647

Following gene: 82546644

Centisome position: 97.39

GC content: 51.82

Gene sequence:

>330_bases
GTGGAGTGGCTGACGGATAATGGTTCATGCTACCGGGCTAATGAAACACGCCAGTTCGCCCGGATGTTGGGACTTGAACC
GAAGAACACGGCGGTGCGGAGTCCGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCA
GTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCG
CATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCT
GGAAATATAG

Upstream 100 bases:

>100_bases
ACTGGGCGGTGACTACCGGCGGCTCAACAGTGAAACAGTACTGGACGTCATGCTGGGTGCGGTGGAACGCCGCTTCGGCA
ACGATCTTCCGTCGTCTCCA

Downstream 100 bases:

>100_bases
GGGCAAATCCAACCTTCAAAATAAACGTTTAATAGGGACAATCACCATTTGGATTGTCCGCTGAGGAGGCGAACGTTTTC
CTAGACAGCTTTATCATGTC

Product: IS2 ORF2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 109; Mature: 109

Protein sequence:

>109_residues
MEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHP
HSALGYRSPREYLRQRACNGLSDNRCLEI

Sequences:

>Translated_109_residues
MEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHP
HSALGYRSPREYLRQRACNGLSDNRCLEI
>Mature_109_residues
MEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHP
HSALGYRSPREYLRQRACNGLSDNRCLEI

Specific function: Involved in the transposition of the insertion sequence is2 [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1790724, Length=109, Percent_Identity=99.0825688073395, Blast_Score=230, Evalue=2e-62,
Organism=Escherichia coli, GI1789424, Length=109, Percent_Identity=99.0825688073395, Blast_Score=230, Evalue=2e-62,
Organism=Escherichia coli, GI1789224, Length=109, Percent_Identity=99.0825688073395, Blast_Score=230, Evalue=2e-62,
Organism=Escherichia coli, GI1788305, Length=109, Percent_Identity=99.0825688073395, Blast_Score=230, Evalue=2e-62,
Organism=Escherichia coli, GI1787669, Length=109, Percent_Identity=99.0825688073395, Blast_Score=230, Evalue=2e-62,
Organism=Escherichia coli, GI1786558, Length=109, Percent_Identity=99.0825688073395, Blast_Score=230, Evalue=2e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR001584
- InterPro:   IPR012337
- InterPro:   IPR002514 [H]

Pfam domain/function: PF00665 rve; PF01527 Transposase_8 [H]

EC number: NA

Molecular weight: Translated: 12506; Mature: 12506

Theoretical pI: Translated: 8.06; Mature: 8.06

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPD
CCCCCCCCCEEECHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
GLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI
CHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEECC
>Mature Secondary Structure
MEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPD
CCCCCCCCCEEECHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
GLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI
CHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA