| Definition | Shigella boydii Sb227, complete genome. |
|---|---|
| Accession | NC_007613 |
| Length | 4,519,823 |
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The map label for this gene is exuT [H]
Identifier: 82546551
GI number: 82546551
Start: 4303639
End: 4304889
Strand: Direct
Name: exuT [H]
Synonym: SBO_4247
Alternate gene names: 82546551
Gene position: 4303639-4304889 (Clockwise)
Preceding gene: 82546550
Following gene: 82546553
Centisome position: 95.22
GC content: 47.24
Gene sequence:
>1251_bases ATGAATAAAATAAAGAATTACCGGTGGCATATGATTGCCCTCGTATGCTTTATCACTGTAATCAATTATCTGGACAGAAC GGCGTTAGGTATTGCGGCTCCAACGATTATGGAGACAACCGGAATAACTAAAGAGCAATATTCATGGATTGTCAGTGCAT TCCAGTTGGCCTATACATTAGGGCAACCGGTAATGGGCTTCTTTATTGATACCGTGGGTCTGAAGTTAAGTTTTGCGATA TGTGCCGCAATTTGGGGCCTGGCGACAATGGGCCATGCACTAACCGGAACGTGGTCTGGTCTGGCATTTATGCGCGCCCT GATGGGTTTCAGCGAAGCGTCGGCAATTCCGGCGGGTGTAAAAACCGCATCAACATGGTTCCCGGCAAAAGAGCGTGGCG TGGCGACAGGTGTTTTCAATATGGGCACCTCACTCGGCGCGATGCTTGCTCCACCGTTGATTGCCTGGTGCATTATGTTT CATAGCTGGCAATTTGCGTTTATTGTTTCAGGTAGTCTTGCTTTGCTCGCGGCTTTATTTTGGTTCTTTTGTTATAAAGA TCCGAAAGATGCCAAACGCCTTTCTGATGAAGAGCGCCACTATATTGAATCAGGGCAAGAACAGCATCTTAAAACAGATA AGAAAGAAAAAACGTCAATCAAGCATATCCTCAGCCAACGTAATTTCTGGGGGATTGGCATCGCGCGTTTTCTCGCAGAC CCGGCATGGGGAACCATTAACTTCTGGGTGCCGATTTTCTTCGTCGAAACGCTGCATTTTAGCCTGAAAGAAATTGCCAT GTTCGTCTGGCTGCCTTTCCTGCTGGGCGATCTCGGCTGTTTAGCCAGTGGTTTTGTCGCGAAGTTCTTCCACGATCGCG GCGTGAGTTTAATTAACTCACGAAGAATTACCTTCACTATTGCAGCCGTCATTATGATGACGATTGGCCTGGTGAGTATT GTCGAAAATCCCTACATTGCCGTATTACTGATTAGTATTGGCGCGTTCTCGCATCAATGTCTTTCTACTGTAGCAGCAAC TCTGGGTGGCGATCTGTTCAAAAAAGACGAAGTAGCTACCGCAGTGGGTATGGCAGTAGCCTGTGCGTGGAGCGGTCAGT TGATTTTCAACCTGTTCATCGGGGCATTCGTTCACATTATCGGCTTCGCGCCGTTCTTTATTGCCCTGGCTTTCTTTGAC ATTATTGGTGCTATTGCGTTGTGGACGCTGGTAATGACTCCAACTTACTGA
Upstream 100 bases:
>100_bases CACAATAATTTTCAATATTTCCTCTGTACCTGATTTTTATTACCTATTACACGGAAATACCAACAACCAGGGTTTATTAA TATAATTAAAAGGTTTAAAC
Downstream 100 bases:
>100_bases TAGTGTTTTATGTTCAGATAATGCCCGATGACCTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGTGACTTCCGTCC CAGCCTTGCCAGATGTTGTC
Product: transport protein of hexuronates
Products: galacturonate [Cytoplasm]; Proton [Cytoplasm]; glucuronate [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 416; Mature: 416
Protein sequence:
>416_residues MNKIKNYRWHMIALVCFITVINYLDRTALGIAAPTIMETTGITKEQYSWIVSAFQLAYTLGQPVMGFFIDTVGLKLSFAI CAAIWGLATMGHALTGTWSGLAFMRALMGFSEASAIPAGVKTASTWFPAKERGVATGVFNMGTSLGAMLAPPLIAWCIMF HSWQFAFIVSGSLALLAALFWFFCYKDPKDAKRLSDEERHYIESGQEQHLKTDKKEKTSIKHILSQRNFWGIGIARFLAD PAWGTINFWVPIFFVETLHFSLKEIAMFVWLPFLLGDLGCLASGFVAKFFHDRGVSLINSRRITFTIAAVIMMTIGLVSI VENPYIAVLLISIGAFSHQCLSTVAATLGGDLFKKDEVATAVGMAVACAWSGQLIFNLFIGAFVHIIGFAPFFIALAFFD IIGAIALWTLVMTPTY
Sequences:
>Translated_416_residues MNKIKNYRWHMIALVCFITVINYLDRTALGIAAPTIMETTGITKEQYSWIVSAFQLAYTLGQPVMGFFIDTVGLKLSFAI CAAIWGLATMGHALTGTWSGLAFMRALMGFSEASAIPAGVKTASTWFPAKERGVATGVFNMGTSLGAMLAPPLIAWCIMF HSWQFAFIVSGSLALLAALFWFFCYKDPKDAKRLSDEERHYIESGQEQHLKTDKKEKTSIKHILSQRNFWGIGIARFLAD PAWGTINFWVPIFFVETLHFSLKEIAMFVWLPFLLGDLGCLASGFVAKFFHDRGVSLINSRRITFTIAAVIMMTIGLVSI VENPYIAVLLISIGAFSHQCLSTVAATLGGDLFKKDEVATAVGMAVACAWSGQLIFNLFIGAFVHIIGFAPFFIALAFFD IIGAIALWTLVMTPTY >Mature_416_residues MNKIKNYRWHMIALVCFITVINYLDRTALGIAAPTIMETTGITKEQYSWIVSAFQLAYTLGQPVMGFFIDTVGLKLSFAI CAAIWGLATMGHALTGTWSGLAFMRALMGFSEASAIPAGVKTASTWFPAKERGVATGVFNMGTSLGAMLAPPLIAWCIMF HSWQFAFIVSGSLALLAALFWFFCYKDPKDAKRLSDEERHYIESGQEQHLKTDKKEKTSIKHILSQRNFWGIGIARFLAD PAWGTINFWVPIFFVETLHFSLKEIAMFVWLPFLLGDLGCLASGFVAKFFHDRGVSLINSRRITFTIAAVIMMTIGLVSI VENPYIAVLLISIGAFSHQCLSTVAATLGGDLFKKDEVATAVGMAVACAWSGQLIFNLFIGAFVHIIGFAPFFIALAFFD IIGAIALWTLVMTPTY
Specific function: Aldohexuronate transport system [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. Phthalate permease family [H]
Homologues:
Organism=Homo sapiens, GI6912666, Length=309, Percent_Identity=27.5080906148867, Blast_Score=79, Evalue=6e-15, Organism=Homo sapiens, GI9966811, Length=241, Percent_Identity=25.7261410788382, Blast_Score=74, Evalue=4e-13, Organism=Homo sapiens, GI9945322, Length=355, Percent_Identity=25.0704225352113, Blast_Score=73, Evalue=5e-13, Organism=Homo sapiens, GI154350196, Length=396, Percent_Identity=22.2222222222222, Blast_Score=70, Evalue=5e-12, Organism=Homo sapiens, GI154800443, Length=269, Percent_Identity=25.6505576208178, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI148743791, Length=227, Percent_Identity=23.3480176211454, Blast_Score=69, Evalue=7e-12, Organism=Escherichia coli, GI2367193, Length=414, Percent_Identity=47.8260869565217, Blast_Score=417, Evalue=1e-118, Organism=Escherichia coli, GI87082320, Length=421, Percent_Identity=27.790973871734, Blast_Score=151, Evalue=8e-38, Organism=Escherichia coli, GI1789515, Length=344, Percent_Identity=27.0348837209302, Blast_Score=144, Evalue=8e-36, Organism=Escherichia coli, GI2367379, Length=308, Percent_Identity=27.9220779220779, Blast_Score=142, Evalue=4e-35, Organism=Escherichia coli, GI1789152, Length=330, Percent_Identity=23.6363636363636, Blast_Score=120, Evalue=2e-28, Organism=Escherichia coli, GI87082071, Length=233, Percent_Identity=26.6094420600858, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1788573, Length=309, Percent_Identity=24.5954692556634, Blast_Score=69, Evalue=7e-13, Organism=Escherichia coli, GI87082310, Length=323, Percent_Identity=20.1238390092879, Blast_Score=67, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17552542, Length=219, Percent_Identity=26.9406392694064, Blast_Score=75, Evalue=6e-14, Organism=Drosophila melanogaster, GI24583789, Length=314, Percent_Identity=25.796178343949, Blast_Score=87, Evalue=3e-17, Organism=Drosophila melanogaster, GI24584153, Length=272, Percent_Identity=25.3676470588235, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI24641682, Length=299, Percent_Identity=24.7491638795987, Blast_Score=79, Evalue=8e-15, Organism=Drosophila melanogaster, GI20129235, Length=283, Percent_Identity=26.1484098939929, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI24658666, Length=414, Percent_Identity=24.8792270531401, Blast_Score=77, Evalue=3e-14, Organism=Drosophila melanogaster, GI45550495, Length=381, Percent_Identity=25.9842519685039, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24580790, Length=177, Percent_Identity=27.683615819209, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI24658658, Length=357, Percent_Identity=22.96918767507, Blast_Score=73, Evalue=4e-13, Organism=Drosophila melanogaster, GI20130167, Length=394, Percent_Identity=23.6040609137056, Blast_Score=73, Evalue=4e-13, Organism=Drosophila melanogaster, GI28573299, Length=311, Percent_Identity=25.7234726688103, Blast_Score=72, Evalue=6e-13, Organism=Drosophila melanogaster, GI24658674, Length=408, Percent_Identity=24.0196078431373, Blast_Score=67, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004744 - InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 45868; Mature: 45868
Theoretical pI: Translated: 8.48; Mature: 8.48
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKIKNYRWHMIALVCFITVINYLDRTALGIAAPTIMETTGITKEQYSWIVSAFQLAYTL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHH GQPVMGFFIDTVGLKLSFAICAAIWGLATMGHALTGTWSGLAFMRALMGFSEASAIPAGV CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHCCCCCCC KTASTWFPAKERGVATGVFNMGTSLGAMLAPPLIAWCIMFHSWQFAFIVSGSLALLAALF CCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHH WFFCYKDPKDAKRLSDEERHYIESGQEQHLKTDKKEKTSIKHILSQRNFWGIGIARFLAD HHHHCCCCHHHHHCCHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHCC PAWGTINFWVPIFFVETLHFSLKEIAMFVWLPFLLGDLGCLASGFVAKFFHDRGVSLINS CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHC RRITFTIAAVIMMTIGLVSIVENPYIAVLLISIGAFSHQCLSTVAATLGGDLFKKDEVAT CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH AVGMAVACAWSGQLIFNLFIGAFVHIIGFAPFFIALAFFDIIGAIALWTLVMTPTY HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MNKIKNYRWHMIALVCFITVINYLDRTALGIAAPTIMETTGITKEQYSWIVSAFQLAYTL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHH GQPVMGFFIDTVGLKLSFAICAAIWGLATMGHALTGTWSGLAFMRALMGFSEASAIPAGV CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHCCCCCCC KTASTWFPAKERGVATGVFNMGTSLGAMLAPPLIAWCIMFHSWQFAFIVSGSLALLAALF CCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHH WFFCYKDPKDAKRLSDEERHYIESGQEQHLKTDKKEKTSIKHILSQRNFWGIGIARFLAD HHHHCCCCHHHHHCCHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHCC PAWGTINFWVPIFFVETLHFSLKEIAMFVWLPFLLGDLGCLASGFVAKFFHDRGVSLINS CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHC RRITFTIAAVIMMTIGLVSIVENPYIAVLLISIGAFSHQCLSTVAATLGGDLFKKDEVAT CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH AVGMAVACAWSGQLIFNLFIGAFVHIIGFAPFFIALAFFDIIGAIALWTLVMTPTY HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: galacturonate [Periplasm]; Proton [Periplasm]; glucuronate [Periplasm] [C]
Specific reaction: Proton [Periplasm] + galacturonate [Periplasm] = galacturonate [Cytoplasm] + Proton [Cytoplasm] Proton [Periplasm] + glucuronate [Periplasm] = Proton [Cytoplasm] + glucuronate [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]