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The map label for this gene is ytfA

Identifier: 82546545

GI number: 82546545

Start: 4295862

End: 4296188

Strand: Reverse

Name: ytfA

Synonym: SBO_4240

Alternate gene names: 82546545

Gene position: 4296188-4295862 (Counterclockwise)

Preceding gene: 82546552

Following gene: 82546542

Centisome position: 95.05

GC content: 42.2

Gene sequence:

>327_bases
GTGCATAGTGAAAATCAAAGTAAAGGTGTGCATTATGCAAAATCACAGCGTCTCTTAGAAATTAACCATGCGCACTTGCA
GTTAATGGAATCCTTATTGGATGAAGGGAAGAAACACAATATTTTTAAGCCAGATATCGACCCATTGCAGGTGAATATTA
ATATTGCTGCGCTTGGCGGATATTATTTGATCAACCAGCATACGCTTGGCCTGGTTTATCATATCAGTATGGTTTCCCCC
CAGGCACTGGAAGCCAGACGTAAGGTCATCAAAGAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATCTACCGCGCA
CGAATAA

Upstream 100 bases:

>100_bases
GGCCCTTGATTTCTCAGATCTTCCGCCACAAAAAGCTATTGAGAAAATTATTGATTTTACATGGGATTATTATATTGCTA
ACCCCTGGTTTTTAAAAATT

Downstream 100 bases:

>100_bases
AACTGCCATCCGGCTGGCGGGTGAACAGGACCTGTTGATTATTCCCCGTATCAATGGTTAAGCCCGTCACCACGCCGCTG
GCGTTCTGGCGAATTTTCAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 108; Mature: 108

Protein sequence:

>108_residues
MHSENQSKGVHYAKSQRLLEINHAHLQLMESLLDEGKKHNIFKPDIDPLQVNINIAALGGYYLINQHTLGLVYHISMVSP
QALEARRKVIKETILSWLLVDPSSTAHE

Sequences:

>Translated_108_residues
MHSENQSKGVHYAKSQRLLEINHAHLQLMESLLDEGKKHNIFKPDIDPLQVNINIAALGGYYLINQHTLGLVYHISMVSP
QALEARRKVIKETILSWLLVDPSSTAHE
>Mature_108_residues
MHSENQSKGVHYAKSQRLLEINHAHLQLMESLLDEGKKHNIFKPDIDPLQVNINIAALGGYYLINQHTLGLVYHISMVSP
QALEARRKVIKETILSWLLVDPSSTAHE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YTFA_ECOLI (P39309)

Other databases:

- EMBL:   U14003
- EMBL:   U00096
- EMBL:   AP009048
- PIR:   S56430
- RefSeq:   AP_004705.1
- ProteinModelPortal:   P39309
- SMR:   P39309
- EnsemblBacteria:   EBESCT00000017443
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW4163
- EchoBASE:   EB2394
- EcoGene:   EG12501
- GeneTree:   EBGT00050000011419
- HOGENOM:   HBG469741
- OMA:   MVHSENQ
- BioCyc:   EcoCyc:G7863-MONOMER
- Genevestigator:   P39309
- InterPro:   IPR015893
- InterPro:   IPR011075
- Gene3D:   G3DSA:1.10.357.10

Pfam domain/function: SSF48498 TetR_like_C

EC number: NA

Molecular weight: Translated: 12247; Mature: 12247

Theoretical pI: Translated: 7.32; Mature: 7.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHSENQSKGVHYAKSQRLLEINHAHLQLMESLLDEGKKHNIFKPDIDPLQVNINIAALGG
CCCCCCCCCCEECCCCCEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEECC
YYLINQHTLGLVYHISMVSPQALEARRKVIKETILSWLLVDPSSTAHE
EEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHEEECCCCCCCC
>Mature Secondary Structure
MHSENQSKGVHYAKSQRLLEINHAHLQLMESLLDEGKKHNIFKPDIDPLQVNINIAALGG
CCCCCCCCCCEECCCCCEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEECC
YYLINQHTLGLVYHISMVSPQALEARRKVIKETILSWLLVDPSSTAHE
EEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503