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The map label for this gene is cycA [H]

Identifier: 82546541

GI number: 82546541

Start: 4291903

End: 4293315

Strand: Reverse

Name: cycA [H]

Synonym: SBO_4235

Alternate gene names: 82546541

Gene position: 4293315-4291903 (Counterclockwise)

Preceding gene: 82546542

Following gene: 82546538

Centisome position: 94.99

GC content: 52.87

Gene sequence:

>1413_bases
ATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACA
TATTCAGCTTATTGCCATTGGCGGTGCCATTGGTACGGGGTTGTTTCTGGGGTCTGGCAAAACGATTAGCCTTGCCGGGC
CGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCG
AATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACTGGCTGGACTTA
CTGGTTCTGCTGGGTTGTAACCGGTATGGCAGACGTGGTGGCGATCACGGCTTATGCTCAGTTCTGGTTCCCCGATCTCT
CCGACTGGGTCGCCTCGCTGGCGGTGATAGTGCTGCTGCTGACGCTCAACCTTGCCACCGTGAAAATGTTCGGTGAGATG
GAGTTCTGGTTTGCGATGATCAAAATCGTCGCCATCGTGTCGCTGATTGTCGTCGGCCTGGTCATGGTGGCGATGCACTT
TCAGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGGAATGACGGCGGCTGGTTCCCGAAAGGTTTAAGTGGCT
TCTTTGCCGGATTCCAGATAGCGGTTTTCGCTTTCGTGGGGATTGAGCTGGTAGGTACAACAGCTGCGGAAACCAAAGAT
CCGGAGAAATCACTGCCACGCGCGATTAACTCCATTCCGATCCGTATCATTATGTTCTACGTCTTCGCGCTGATTGTGAT
TATGTCCGTGACACCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTCGTTGAGCTGTTTGTGTTGGTAGGTTTGCCTG
CGGCTGCCAGCGTGATCAACTTTGTGGTGCTGACCTCTGCGGCGTCTTCCGCTAACAGCGGCGTCTTCTCTACCAGCCGT
ATGCTGTTTGGTCTGGCGCAGGAAGGTGTGGCACCGAAAGCGTTCGCTAAACTTTCTAAGCGCGCAGTACCAGCGAAAGG
GCTGACCTTCTCCTGCATCTGCCTGCTCGGTGGCGTGGTGATGCTGTATGTGAATCCTAGCGTGATTGGTGCGTTCACGA
TGATTACAACCGTTTCCGCGATTCTGTTTATGTTCGTCTGGACGATTATCCTTTGCTCGTACCTGGTGTACCGCAAACAG
CGTCCTCATCTGCATGAGAAGTCGATCTACAAGATGCCGCTCGGCAAGCTGATGTGCTGGGTATGTATGGCGTTCTTTGT
GTTCGTGGTCGTGTTGCTGACACTGGAAGATGACACTCGCCAGGCGCTGCTGGTTACCCCGCTGTGGTTTATCGCACTGG
GGCTGGGCTGGTTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGCGGAAATAA

Upstream 100 bases:

>100_bases
TACCTAATATCGATGAGTCCCGATACAGATTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAGAC
AGGTACAGGAAGAAAAAAAC

Downstream 100 bases:

>100_bases
CCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCACCCGCCAGCGCGCGTGGGAACAGTACATT
GTTTTCCAGACTGATGTGAT

Product: D-alanine/D-serine/glycine permease

Products: D-glycine [Cytoplasm]; D-alanine [Cytoplasm]; Proton [Cytoplasm]; D-serine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 470; Mature: 470

Protein sequence:

>470_residues
MVDQVKVVADDQAPAEQSLRRNLTNRHIQLIAIGGAIGTGLFLGSGKTISLAGPSIIFVYMIIGFMLFFVMRAMGELLLS
NLEYKSFSDFASDLLGPWAGYFTGWTYWFCWVVTGMADVVAITAYAQFWFPDLSDWVASLAVIVLLLTLNLATVKMFGEM
EFWFAMIKIVAIVSLIVVGLVMVAMHFQSPTGVEASFAHLWNDGGWFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKD
PEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPEKSPFVELFVLVGLPAAASVINFVVLTSAASSANSGVFSTSR
MLFGLAQEGVAPKAFAKLSKRAVPAKGLTFSCICLLGGVVMLYVNPSVIGAFTMITTVSAILFMFVWTIILCSYLVYRKQ
RPHLHEKSIYKMPLGKLMCWVCMAFFVFVVVLLTLEDDTRQALLVTPLWFIALGLGWLFIGKKRAAELRK

Sequences:

>Translated_470_residues
MVDQVKVVADDQAPAEQSLRRNLTNRHIQLIAIGGAIGTGLFLGSGKTISLAGPSIIFVYMIIGFMLFFVMRAMGELLLS
NLEYKSFSDFASDLLGPWAGYFTGWTYWFCWVVTGMADVVAITAYAQFWFPDLSDWVASLAVIVLLLTLNLATVKMFGEM
EFWFAMIKIVAIVSLIVVGLVMVAMHFQSPTGVEASFAHLWNDGGWFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKD
PEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPEKSPFVELFVLVGLPAAASVINFVVLTSAASSANSGVFSTSR
MLFGLAQEGVAPKAFAKLSKRAVPAKGLTFSCICLLGGVVMLYVNPSVIGAFTMITTVSAILFMFVWTIILCSYLVYRKQ
RPHLHEKSIYKMPLGKLMCWVCMAFFVFVVVLLTLEDDTRQALLVTPLWFIALGLGWLFIGKKRAAELRK
>Mature_470_residues
MVDQVKVVADDQAPAEQSLRRNLTNRHIQLIAIGGAIGTGLFLGSGKTISLAGPSIIFVYMIIGFMLFFVMRAMGELLLS
NLEYKSFSDFASDLLGPWAGYFTGWTYWFCWVVTGMADVVAITAYAQFWFPDLSDWVASLAVIVLLLTLNLATVKMFGEM
EFWFAMIKIVAIVSLIVVGLVMVAMHFQSPTGVEASFAHLWNDGGWFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKD
PEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPEKSPFVELFVLVGLPAAASVINFVVLTSAASSANSGVFSTSR
MLFGLAQEGVAPKAFAKLSKRAVPAKGLTFSCICLLGGVVMLYVNPSVIGAFTMITTVSAILFMFVWTIILCSYLVYRKQ
RPHLHEKSIYKMPLGKLMCWVCMAFFVFVVVLLTLEDDTRQALLVTPLWFIALGLGWLFIGKKRAAELRK

Specific function: Permease that is involved in the transport across the cytoplasmic membrane of D-alanine, D-serine and glycine [H]

COG id: COG1113

COG function: function code E; Gamma-aminobutyrate permease and related permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily. Amino acid transporter (AAT) (TC 2.A.3.1) family [H]

Homologues:

Organism=Homo sapiens, GI110347453, Length=367, Percent_Identity=22.0708446866485, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI114326544, Length=363, Percent_Identity=22.038567493113, Blast_Score=70, Evalue=4e-12,
Organism=Homo sapiens, GI114326550, Length=363, Percent_Identity=22.038567493113, Blast_Score=70, Evalue=4e-12,
Organism=Homo sapiens, GI181337167, Length=343, Percent_Identity=22.1574344023324, Blast_Score=70, Evalue=4e-12,
Organism=Homo sapiens, GI115648063, Length=369, Percent_Identity=25.4742547425474, Blast_Score=69, Evalue=9e-12,
Organism=Homo sapiens, GI115648022, Length=369, Percent_Identity=25.4742547425474, Blast_Score=69, Evalue=9e-12,
Organism=Homo sapiens, GI258645169, Length=145, Percent_Identity=29.6551724137931, Blast_Score=68, Evalue=1e-11,
Organism=Escherichia coli, GI1790653, Length=470, Percent_Identity=99.7872340425532, Blast_Score=942, Evalue=0.0,
Organism=Escherichia coli, GI1786302, Length=461, Percent_Identity=40.5639913232104, Blast_Score=352, Evalue=3e-98,
Organism=Escherichia coli, GI1786789, Length=453, Percent_Identity=38.1898454746137, Blast_Score=338, Evalue=5e-94,
Organism=Escherichia coli, GI1786602, Length=454, Percent_Identity=41.1894273127753, Blast_Score=337, Evalue=7e-94,
Organism=Escherichia coli, GI48994972, Length=462, Percent_Identity=38.3116883116883, Blast_Score=323, Evalue=1e-89,
Organism=Escherichia coli, GI87081915, Length=459, Percent_Identity=37.4727668845316, Blast_Score=297, Evalue=1e-81,
Organism=Escherichia coli, GI87081708, Length=465, Percent_Identity=32.9032258064516, Blast_Score=243, Evalue=2e-65,
Organism=Escherichia coli, GI1788480, Length=422, Percent_Identity=35.0710900473934, Blast_Score=240, Evalue=1e-64,
Organism=Escherichia coli, GI1789017, Length=447, Percent_Identity=29.9776286353468, Blast_Score=225, Evalue=5e-60,
Organism=Escherichia coli, GI2367353, Length=399, Percent_Identity=24.5614035087719, Blast_Score=72, Evalue=9e-14,
Organism=Escherichia coli, GI87082023, Length=351, Percent_Identity=21.6524216524217, Blast_Score=69, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17532491, Length=365, Percent_Identity=24.3835616438356, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17531343, Length=449, Percent_Identity=21.826280623608, Blast_Score=68, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17540018, Length=374, Percent_Identity=25.9358288770053, Blast_Score=65, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6324061, Length=461, Percent_Identity=32.1041214750542, Blast_Score=207, Evalue=4e-54,
Organism=Saccharomyces cerevisiae, GI6324924, Length=426, Percent_Identity=31.2206572769953, Blast_Score=193, Evalue=5e-50,
Organism=Saccharomyces cerevisiae, GI6320772, Length=446, Percent_Identity=29.1479820627803, Blast_Score=183, Evalue=4e-47,
Organism=Saccharomyces cerevisiae, GI6322892, Length=421, Percent_Identity=29.6912114014252, Blast_Score=167, Evalue=4e-42,
Organism=Saccharomyces cerevisiae, GI6324990, Length=414, Percent_Identity=30.4347826086957, Blast_Score=166, Evalue=1e-41,
Organism=Saccharomyces cerevisiae, GI6324059, Length=459, Percent_Identity=28.7581699346405, Blast_Score=152, Evalue=9e-38,
Organism=Saccharomyces cerevisiae, GI6324553, Length=399, Percent_Identity=28.0701754385965, Blast_Score=152, Evalue=2e-37,
Organism=Saccharomyces cerevisiae, GI6321629, Length=430, Percent_Identity=27.6744186046512, Blast_Score=151, Evalue=2e-37,
Organism=Saccharomyces cerevisiae, GI6320717, Length=414, Percent_Identity=25.8454106280193, Blast_Score=150, Evalue=6e-37,
Organism=Saccharomyces cerevisiae, GI6319824, Length=408, Percent_Identity=25.9803921568627, Blast_Score=147, Evalue=5e-36,
Organism=Saccharomyces cerevisiae, GI6319543, Length=437, Percent_Identity=27.0022883295195, Blast_Score=146, Evalue=6e-36,
Organism=Saccharomyces cerevisiae, GI6320251, Length=402, Percent_Identity=26.865671641791, Blast_Score=145, Evalue=1e-35,
Organism=Saccharomyces cerevisiae, GI6321053, Length=410, Percent_Identity=26.8292682926829, Blast_Score=145, Evalue=1e-35,
Organism=Saccharomyces cerevisiae, GI6319608, Length=417, Percent_Identity=26.6187050359712, Blast_Score=144, Evalue=3e-35,
Organism=Saccharomyces cerevisiae, GI6319542, Length=400, Percent_Identity=25.75, Blast_Score=144, Evalue=4e-35,
Organism=Saccharomyces cerevisiae, GI6322967, Length=421, Percent_Identity=28.5035629453682, Blast_Score=132, Evalue=9e-32,
Organism=Saccharomyces cerevisiae, GI6324981, Length=419, Percent_Identity=27.4463007159904, Blast_Score=107, Evalue=3e-24,
Organism=Saccharomyces cerevisiae, GI6320364, Length=489, Percent_Identity=24.3353783231084, Blast_Score=95, Evalue=3e-20,
Organism=Drosophila melanogaster, GI221512776, Length=358, Percent_Identity=21.2290502793296, Blast_Score=73, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24666159, Length=358, Percent_Identity=21.2290502793296, Blast_Score=73, Evalue=5e-13,
Organism=Drosophila melanogaster, GI45550968, Length=419, Percent_Identity=26.0143198090692, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI19921172, Length=419, Percent_Identity=26.0143198090692, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004841
- InterPro:   IPR002293
- InterPro:   IPR004840 [H]

Pfam domain/function: PF00324 AA_permease [H]

EC number: NA

Molecular weight: Translated: 51642; Mature: 51642

Theoretical pI: Translated: 8.94; Mature: 8.94

Prosite motif: PS00218 AMINO_ACID_PERMEASE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDQVKVVADDQAPAEQSLRRNLTNRHIQLIAIGGAIGTGLFLGSGKTISLAGPSIIFVY
CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHCEEECCCCEEEECCHHHHHHH
MIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDLLGPWAGYFTGWTYWFCWVVTGMADVV
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AITAYAQFWFPDLSDWVASLAVIVLLLTLNLATVKMFGEMEFWFAMIKIVAIVSLIVVGL
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VMVAMHFQSPTGVEASFAHLWNDGGWFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKD
HHHHHHCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPEKSPFVELFVLVGLPAAASVIN
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCHHHHHHHHHCCCHHHHHHH
FVVLTSAASSANSGVFSTSRMLFGLAQEGVAPKAFAKLSKRAVPAKGLTFSCICLLGGVV
HHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
MLYVNPSVIGAFTMITTVSAILFMFVWTIILCSYLVYRKQRPHLHEKSIYKMPLGKLMCW
HEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHH
VCMAFFVFVVVLLTLEDDTRQALLVTPLWFIALGLGWLFIGKKRAAELRK
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHCCC
>Mature Secondary Structure
MVDQVKVVADDQAPAEQSLRRNLTNRHIQLIAIGGAIGTGLFLGSGKTISLAGPSIIFVY
CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHCEEECCCCEEEECCHHHHHHH
MIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDLLGPWAGYFTGWTYWFCWVVTGMADVV
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AITAYAQFWFPDLSDWVASLAVIVLLLTLNLATVKMFGEMEFWFAMIKIVAIVSLIVVGL
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VMVAMHFQSPTGVEASFAHLWNDGGWFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKD
HHHHHHCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPEKSPFVELFVLVGLPAAASVIN
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCHHHHHHHHHCCCHHHHHHH
FVVLTSAASSANSGVFSTSRMLFGLAQEGVAPKAFAKLSKRAVPAKGLTFSCICLLGGVV
HHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
MLYVNPSVIGAFTMITTVSAILFMFVWTIILCSYLVYRKQRPHLHEKSIYKMPLGKLMCW
HEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHH
VCMAFFVFVVVLLTLEDDTRQALLVTPLWFIALGLGWLFIGKKRAAELRK
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: D-glycine [Periplasm]; D-alanine [Periplasm]; Proton [Periplasm]; D-serine [Periplasm] [C]

Specific reaction: Proton [Periplasm] + D-glycine [Periplasm] = Proton [Cytoplasm] + D-glycine [Cytoplasm] Proton [Periplasm] + D-alanine [Periplasm] = Proton [Cytoplasm] + D-alanine [Cytoplasm] Proton [Periplasm] + D-serine [Periplasm] = Proton [Cytoplasm] + D-serine [Cyto

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]