Click here to switch to the map view.

The map label for this gene is phnL [H]

Identifier: 82546432

GI number: 82546432

Start: 4166412

End: 4167092

Strand: Reverse

Name: phnL [H]

Synonym: SBO_4122

Alternate gene names: 82546432

Gene position: 4167092-4166412 (Counterclockwise)

Preceding gene: 82546433

Following gene: 82546431

Centisome position: 92.2

GC content: 60.21

Gene sequence:

>681_bases
ATGATTAACGTACAAAACGTCAGTAAAACCTTCATCCTGCATCAGCAAAACGGCGTACGCCTGCCCGTCTTACAACGTGC
CTCGCTCACCGTCAACGCAGGCGAATGCGTGGTGCTCCACGGTCACTCCGGCAGCGGCAAATCAACCCTGCTGCGCTCGC
TGTACGCCAACTATCTACCCGACGAAGGTCAAATCCAGATCAAACACGGTGACGAGTGGGTAGACCTGGTCACCGCGCCA
GCGCGCAAAGTGGTGGAAATCCGCAAAACCACAGTCGGCTGGGTGAGCCAGTTTCTGCGCGTCATCCCGCGTATCTCAGC
ACTGGAAGTGGTGATGCAGCCGCTGCTCGATACCGGCGTTCCGCGTGAAGCCTGCGCCGCTAAAGCCGCGCGTCTTCTCA
CCCGCCTGAACGTGCCGGAACGCCTGTGGCACCTGGCACCATCGACCTTCTCCGGCGGCGAACAGCAGCGCGTCAACATC
GCCCGCGGCTTTATCGTCGACTACCCCATTCTGCTGCTCGACGAACCTACCGCCTCGCTGGACGCCAAAAACAGCGCCGC
GGTGGTGGAACTGATTCACGAAGCCAAAGCCCGTGGCGCAGCCATCGTCGGCATCTTCCATGACGAAGCTGTACGTAATG
ACGTCGCCGACCGCCTGCACCCAATGGGAGCCTCTTCATGA

Upstream 100 bases:

>100_bases
GATGCGGCGTAAACGCCTTATCCGGCCTACAAATGCGCTCCCCGTAGGTCGGATAAGACGCGTCAGCGTCGCATCCGACA
CCCGAACCACGAGGCGAAAA

Downstream 100 bases:

>100_bases
TTATCAATAACGTTAAGCTGGTGCTGGAAAACGAGGTGGTGCACGGTTCGCTGGAGGTGCAGGATGGCGAAATCCGCGCC
TTTGCCGAAAGCCAGAGCCG

Product: ATP-binding component of phosphonate transport

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MINVQNVSKTFILHQQNGVRLPVLQRASLTVNAGECVVLHGHSGSGKSTLLRSLYANYLPDEGQIQIKHGDEWVDLVTAP
ARKVVEIRKTTVGWVSQFLRVIPRISALEVVMQPLLDTGVPREACAAKAARLLTRLNVPERLWHLAPSTFSGGEQQRVNI
ARGFIVDYPILLLDEPTASLDAKNSAAVVELIHEAKARGAAIVGIFHDEAVRNDVADRLHPMGASS

Sequences:

>Translated_226_residues
MINVQNVSKTFILHQQNGVRLPVLQRASLTVNAGECVVLHGHSGSGKSTLLRSLYANYLPDEGQIQIKHGDEWVDLVTAP
ARKVVEIRKTTVGWVSQFLRVIPRISALEVVMQPLLDTGVPREACAAKAARLLTRLNVPERLWHLAPSTFSGGEQQRVNI
ARGFIVDYPILLLDEPTASLDAKNSAAVVELIHEAKARGAAIVGIFHDEAVRNDVADRLHPMGASS
>Mature_226_residues
MINVQNVSKTFILHQQNGVRLPVLQRASLTVNAGECVVLHGHSGSGKSTLLRSLYANYLPDEGQIQIKHGDEWVDLVTAP
ARKVVEIRKTTVGWVSQFLRVIPRISALEVVMQPLLDTGVPREACAAKAARLLTRLNVPERLWHLAPSTFSGGEQQRVNI
ARGFIVDYPILLLDEPTASLDAKNSAAVVELIHEAKARGAAIVGIFHDEAVRNDVADRLHPMGASS

Specific function: Part of the binding-protein-dependent transport system for alkylphosphonates. Probably responsible for energy coupling to the transport system [H]

COG id: COG4778

COG function: function code P; ABC-type phosphonate transport system, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI116734710, Length=223, Percent_Identity=25.5605381165919, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI1790534, Length=226, Percent_Identity=98.6725663716814, Blast_Score=455, Evalue=1e-129,
Organism=Escherichia coli, GI87081834, Length=209, Percent_Identity=33.9712918660287, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1787029, Length=221, Percent_Identity=37.5565610859729, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1788225, Length=220, Percent_Identity=34.0909090909091, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1787105, Length=192, Percent_Identity=31.7708333333333, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787089, Length=193, Percent_Identity=33.160621761658, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1789672, Length=222, Percent_Identity=31.5315315315315, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1786703, Length=194, Percent_Identity=36.0824742268041, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI1789032, Length=221, Percent_Identity=32.579185520362, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1786398, Length=219, Percent_Identity=29.6803652968037, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1789962, Length=197, Percent_Identity=28.4263959390863, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1789873, Length=208, Percent_Identity=28.8461538461538, Blast_Score=81, Evalue=5e-17,
Organism=Escherichia coli, GI1790544, Length=225, Percent_Identity=32.4444444444444, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1788644, Length=215, Percent_Identity=29.3023255813954, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787759, Length=216, Percent_Identity=31.0185185185185, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI48994997, Length=190, Percent_Identity=32.6315789473684, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1789891, Length=188, Percent_Identity=31.9148936170213, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788761, Length=230, Percent_Identity=33.0434782608696, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI87081709, Length=218, Percent_Identity=30.7339449541284, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1786872, Length=224, Percent_Identity=31.25, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87081791, Length=220, Percent_Identity=28.6363636363636, Blast_Score=70, Evalue=8e-14,
Organism=Escherichia coli, GI1787500, Length=197, Percent_Identity=26.3959390862944, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI145693107, Length=202, Percent_Identity=29.7029702970297, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI48995001, Length=226, Percent_Identity=26.5486725663717, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789991, Length=217, Percent_Identity=27.1889400921659, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787792, Length=211, Percent_Identity=30.3317535545024, Blast_Score=67, Evalue=7e-13,
Organism=Escherichia coli, GI48994883, Length=235, Percent_Identity=25.9574468085106, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1790467, Length=219, Percent_Identity=28.310502283105, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788506, Length=237, Percent_Identity=29.535864978903, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788450, Length=216, Percent_Identity=31.9444444444444, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787370, Length=198, Percent_Identity=29.7979797979798, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1787112, Length=180, Percent_Identity=30, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI87082267, Length=187, Percent_Identity=29.9465240641711, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1790190, Length=213, Percent_Identity=28.169014084507, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787712, Length=193, Percent_Identity=29.5336787564767, Blast_Score=64, Evalue=6e-12,
Organism=Escherichia coli, GI1786253, Length=157, Percent_Identity=35.6687898089172, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI1790739, Length=209, Percent_Identity=26.7942583732057, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790525, Length=217, Percent_Identity=26.7281105990783, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI1788897, Length=194, Percent_Identity=30.9278350515464, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1787758, Length=197, Percent_Identity=28.4263959390863, Blast_Score=60, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6323217, Length=221, Percent_Identity=28.5067873303167, Blast_Score=66, Evalue=4e-12,
Organism=Saccharomyces cerevisiae, GI6322640, Length=170, Percent_Identity=37.0588235294118, Blast_Score=64, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6319856, Length=198, Percent_Identity=27.2727272727273, Blast_Score=62, Evalue=8e-11,
Organism=Drosophila melanogaster, GI17136662, Length=192, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24659289, Length=197, Percent_Identity=32.48730964467, Blast_Score=65, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR012701 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 24671; Mature: 24671

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINVQNVSKTFILHQQNGVRLPVLQRASLTVNAGECVVLHGHSGSGKSTLLRSLYANYLP
CCCCCCCCEEEEEECCCCCCCCEEECCEEEEECCCEEEEECCCCCCHHHHHHHHHHHHCC
DEGQIQIKHGDEWVDLVTAPARKVVEIRKTTVGWVSQFLRVIPRISALEVVMQPLLDTGV
CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC
PREACAAKAARLLTRLNVPERLWHLAPSTFSGGEQQRVNIARGFIVDYPILLLDEPTASL
CHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCC
DAKNSAAVVELIHEAKARGAAIVGIFHDEAVRNDVADRLHPMGASS
CCCCHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MINVQNVSKTFILHQQNGVRLPVLQRASLTVNAGECVVLHGHSGSGKSTLLRSLYANYLP
CCCCCCCCEEEEEECCCCCCCCEEECCEEEEECCCEEEEECCCCCCHHHHHHHHHHHHCC
DEGQIQIKHGDEWVDLVTAPARKVVEIRKTTVGWVSQFLRVIPRISALEVVMQPLLDTGV
CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC
PREACAAKAARLLTRLNVPERLWHLAPSTFSGGEQQRVNIARGFIVDYPILLLDEPTASL
CHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCC
DAKNSAAVVELIHEAKARGAAIVGIFHDEAVRNDVADRLHPMGASS
CCCCHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2155230; 1840580; 7610040; 9278503 [H]