| Definition | Shigella boydii Sb227, complete genome. |
|---|---|
| Accession | NC_007613 |
| Length | 4,519,823 |
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The map label for this gene is yjbH [H]
Identifier: 82546372
GI number: 82546372
Start: 4100468
End: 4102564
Strand: Direct
Name: yjbH [H]
Synonym: SBO_4057
Alternate gene names: 82546372
Gene position: 4100468-4102564 (Clockwise)
Preceding gene: 82546371
Following gene: 82546374
Centisome position: 90.72
GC content: 54.27
Gene sequence:
>2097_bases ATGAAAAAAAGACATCTGCTTAGCTTACTGGCGCTGGGCATTAGCATGGCTTGCTACGGCGAAACATATCCTGCGCCCAT TGGCCCGTCGCAGTCGGATTTCGGTGGCGTAGGATTATTACAAACGCCCACCGCACGCATGGCGCGGGAAGGGGAGTTGA GCCTGAACTATCGCGATAACGATCAGTACCGTTATTACTCAGCTTCAGTGCAACTCTTCCCGTGGCTGGAAACAACGCTG CGCTACACCGACGTGCGCACCCGGCAGTACAGCAGCGTCGAAGCGTTCTCTGGCGATCAAACGTATAAAGATAAAGCCTT CGATCTCAAACTGCGTTTGTGGGAAGAGAGTTACTGGCTGCCGCAAGTGGCGGTTGGTGCGAGGGATATCGGCGGTACGG GGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGTTAT CTGGGCACCAGCGGTAATGTGAAAAATCCGCTCTGTTCAGCCAGTGATAAATATTGCTATCGCGATAACAGCTACAAACA GGCGGGATCTATCGACGGTAGCCAGATGTTCCACGGTCCTGCCTCACTGTTTGGCGGCGTGGAATACCAGACGCCTTGGC AACCGCTGCGCCTGAAACTGGAGTATGAAGGCAATAATTATCAGCAGGATTTTGCCGGGAAGCTGGAGCAAAAAAGTAAG TTTAACGTCGGTGCGATTTATCGCGTTACCGATTGGGCCGACGTTAACCTTAGCTATGAACGTGGCAACACCTTTATGTT TGGCGTCACGCTGCGCACCAACTTTAACGATCTGCGCCCGTCTTACAACGATAACGCCCGCCCGCAATATCAACCGCAGC CGCAGGATGCCATTTTGCAGCATTCGGTGGTGGCGAATCAGTTAACGCTGTTGAAATACAATGTCGGACTTGCCGATCCG CAGATCCAGGCGAAAGGCGATACGCTGTATGTCACCGGCGAGCAGGTGAAATATCGTGATTCGCGCGAAGGGATCATCCG TGCTAATCGGATCGTGATGAACGATCTGCCGGATGGGATCAAAACGATCCGCATTACGGAAAATCGTCTTAACATGCCGC AGGTGACGACGGAAACCGATGTCGCCAGCCTGAAAAATCATCTCGCCGGAGAGCCGTTGGGCCACGAAACGAAGCTGGCG CAAAAACGCGTCGAGCCAGTGGTTCCGCAGTCCACCGAGCAGGGCTGGTATATCGACAAATCACGCTTTGATTTCCATAT CGATCCGGTGCTGAACCAGTCGGTCGGTGGCCCGGAAAACTTTTACATGTATCAGCTGGGCGTGATGGGAATGGCAGATT TGTGGCTGACGGACCATCTGCTGACCACCGGCAGCCTGTTTGCAAATCTTGCCAACAACTACGACAAGTTTAACTACACC AATCCGCCGCAGGACTCGCACTTACCGCGCGTTCGTACCCATGTGCGCGAGTATGTGCAGAACGATGTCTATGTGAATAA CCTGCAAGCCAACTACTTCCAGCATCTGGGCAACGGCTTCTACGGTCAGGTCTATGGAGGTTATCTCGAAACCATGTTTG GCGGTGCGGGGGCCGAAGTGTTGTATCGTCCGCTGGACAGTAACTGGGCGTTTGGTCTGGATGCCAACTACGTTAAACAG CGCGACTGGCGTAGTGCAAAAGATATGATGAAATTCACCGACTACAGCGTGAAAACCGGACATCTGACCGCCTACTGGAC GCCATCTTTCGCCCAGGACGTGTTGGTGAAAGCCAGCGTCGGGCAGTATCTGGCAGGGGATAAAGGCGGCACGCTGGAGA TCGCCAAACGCTTTGACAGCGGCGTGGTGGTGGGTGGCTATGCCACGATCACCAACGTTTTGAAAGAGGAGTACGGCGAA GGGGACTTCACCAAAGGCGTGTATGTCTCGGTACCGTTGGATCTCTTCTCGTCTGGCCCGACACGCAGCCGTGCGGCGAT TGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTA GCGTCAATTTCCGCTAA
Upstream 100 bases:
>100_bases GCATTATTTATGTTGGCCTCGCGGACTCCGTCTGGAGTGAGACGCCTGATGCCCTTAACGCCGACATTCTTCAGACTCTG ACGCAGCGGATACCCCAATA
Downstream 100 bases:
>100_bases GTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTC ACCCCCGGTTTGCGATCTGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 698; Mature: 698
Protein sequence:
>698_residues MKKRHLLSLLALGISMACYGETYPAPIGPSQSDFGGVGLLQTPTARMAREGELSLNYRDNDQYRYYSASVQLFPWLETTL RYTDVRTRQYSSVEAFSGDQTYKDKAFDLKLRLWEESYWLPQVAVGARDIGGTGLFDAEYLVASKAWGPFDFTLGLGWGY LGTSGNVKNPLCSASDKYCYRDNSYKQAGSIDGSQMFHGPASLFGGVEYQTPWQPLRLKLEYEGNNYQQDFAGKLEQKSK FNVGAIYRVTDWADVNLSYERGNTFMFGVTLRTNFNDLRPSYNDNARPQYQPQPQDAILQHSVVANQLTLLKYNVGLADP QIQAKGDTLYVTGEQVKYRDSREGIIRANRIVMNDLPDGIKTIRITENRLNMPQVTTETDVASLKNHLAGEPLGHETKLA QKRVEPVVPQSTEQGWYIDKSRFDFHIDPVLNQSVGGPENFYMYQLGVMGMADLWLTDHLLTTGSLFANLANNYDKFNYT NPPQDSHLPRVRTHVREYVQNDVYVNNLQANYFQHLGNGFYGQVYGGYLETMFGGAGAEVLYRPLDSNWAFGLDANYVKQ RDWRSAKDMMKFTDYSVKTGHLTAYWTPSFAQDVLVKASVGQYLAGDKGGTLEIAKRFDSGVVVGGYATITNVLKEEYGE GDFTKGVYVSVPLDLFSSGPTRSRAAIGWTPLTRDGGQQLGRKFQLYDMTSDRSVNFR
Sequences:
>Translated_698_residues MKKRHLLSLLALGISMACYGETYPAPIGPSQSDFGGVGLLQTPTARMAREGELSLNYRDNDQYRYYSASVQLFPWLETTL RYTDVRTRQYSSVEAFSGDQTYKDKAFDLKLRLWEESYWLPQVAVGARDIGGTGLFDAEYLVASKAWGPFDFTLGLGWGY LGTSGNVKNPLCSASDKYCYRDNSYKQAGSIDGSQMFHGPASLFGGVEYQTPWQPLRLKLEYEGNNYQQDFAGKLEQKSK FNVGAIYRVTDWADVNLSYERGNTFMFGVTLRTNFNDLRPSYNDNARPQYQPQPQDAILQHSVVANQLTLLKYNVGLADP QIQAKGDTLYVTGEQVKYRDSREGIIRANRIVMNDLPDGIKTIRITENRLNMPQVTTETDVASLKNHLAGEPLGHETKLA QKRVEPVVPQSTEQGWYIDKSRFDFHIDPVLNQSVGGPENFYMYQLGVMGMADLWLTDHLLTTGSLFANLANNYDKFNYT NPPQDSHLPRVRTHVREYVQNDVYVNNLQANYFQHLGNGFYGQVYGGYLETMFGGAGAEVLYRPLDSNWAFGLDANYVKQ RDWRSAKDMMKFTDYSVKTGHLTAYWTPSFAQDVLVKASVGQYLAGDKGGTLEIAKRFDSGVVVGGYATITNVLKEEYGE GDFTKGVYVSVPLDLFSSGPTRSRAAIGWTPLTRDGGQQLGRKFQLYDMTSDRSVNFR >Mature_698_residues MKKRHLLSLLALGISMACYGETYPAPIGPSQSDFGGVGLLQTPTARMAREGELSLNYRDNDQYRYYSASVQLFPWLETTL RYTDVRTRQYSSVEAFSGDQTYKDKAFDLKLRLWEESYWLPQVAVGARDIGGTGLFDAEYLVASKAWGPFDFTLGLGWGY LGTSGNVKNPLCSASDKYCYRDNSYKQAGSIDGSQMFHGPASLFGGVEYQTPWQPLRLKLEYEGNNYQQDFAGKLEQKSK FNVGAIYRVTDWADVNLSYERGNTFMFGVTLRTNFNDLRPSYNDNARPQYQPQPQDAILQHSVVANQLTLLKYNVGLADP QIQAKGDTLYVTGEQVKYRDSREGIIRANRIVMNDLPDGIKTIRITENRLNMPQVTTETDVASLKNHLAGEPLGHETKLA QKRVEPVVPQSTEQGWYIDKSRFDFHIDPVLNQSVGGPENFYMYQLGVMGMADLWLTDHLLTTGSLFANLANNYDKFNYT NPPQDSHLPRVRTHVREYVQNDVYVNNLQANYFQHLGNGFYGQVYGGYLETMFGGAGAEVLYRPLDSNWAFGLDANYVKQ RDWRSAKDMMKFTDYSVKTGHLTAYWTPSFAQDVLVKASVGQYLAGDKGGTLEIAKRFDSGVVVGGYATITNVLKEEYGE GDFTKGVYVSVPLDLFSSGPTRSRAAIGWTPLTRDGGQQLGRKFQLYDMTSDRSVNFR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To E.coli ymcA [H]
Homologues:
Organism=Escherichia coli, GI1790461, Length=698, Percent_Identity=99.2836676217765, Blast_Score=1434, Evalue=0.0, Organism=Escherichia coli, GI1787219, Length=696, Percent_Identity=64.2241379310345, Blast_Score=942, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010344 [H]
Pfam domain/function: PF06082 DUF940 [H]
EC number: NA
Molecular weight: Translated: 78633; Mature: 78633
Theoretical pI: Translated: 6.60; Mature: 6.60
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKRHLLSLLALGISMACYGETYPAPIGPSQSDFGGVGLLQTPTARMAREGELSLNYRDN CCHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCEEECCHHHHCCCCCEEEEECCC DQYRYYSASVQLFPWLETTLRYTDVRTRQYSSVEAFSGDQTYKDKAFDLKLRLWEESYWL CCEEEEEEEEEEEECHHHHHHHHHCCHHCCCCCEECCCCCCCCCCEEEEEEEEECCCCCC PQVAVGARDIGGTGLFDAEYLVASKAWGPFDFTLGLGWGYLGTSGNVKNPLCSASDKYCY CHHCCCCCCCCCCCCCCCHHHEEECCCCCEEEEEECCCEEECCCCCCCCCCCCCCCCEEE RDNSYKQAGSIDGSQMFHGPASLFGGVEYQTPWQPLRLKLEYEGNNYQQDFAGKLEQKSK CCCCCCCCCCCCCHHHCCCHHHHHCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHCCC FNVGAIYRVTDWADVNLSYERGNTFMFGVTLRTNFNDLRPSYNDNARPQYQPQPQDAILQ CCCEEEEEEECEEEEEEEEECCCEEEEEEEEECCCHHCCCCCCCCCCCCCCCCCHHHHHH HSVVANQLTLLKYNVGLADPQIQAKGDTLYVTGEQVKYRDSREGIIRANRIVMNDLPDGI HHHHHCEEEEEEEECCCCCCCEEECCCEEEEECCCEEECCCCCCEEEECEEEECCCCCCC KTIRITENRLNMPQVTTETDVASLKNHLAGEPLGHETKLAQKRVEPVVPQSTEQGWYIDK EEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEC SRFDFHIDPVLNQSVGGPENFYMYQLGVMGMADLWLTDHLLTTGSLFANLANNYDKFNYT CCCCEEECCHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC NPPQDSHLPRVRTHVREYVQNDVYVNNLQANYFQHLGNGFYGQVYGGYLETMFGGAGAEV CCCCCCCCCHHHHHHHHHHHCCEEEECCHHHHHHHHCCCCEEHHHHHHHHHHHCCCCCEE LYRPLDSNWAFGLDANYVKQRDWRSAKDMMKFTDYSVKTGHLTAYWTPSFAQDVLVKASV EEEECCCCEEECCCCHHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCHHHHHHHHHHHH GQYLAGDKGGTLEIAKRFDSGVVVGGYATITNVLKEEYGEGDFTKGVYVSVPLDLFSSGP CHHHCCCCCCEEHHHHHCCCCEEEEHHHHHHHHHHHHCCCCCCCCCEEEEECHHHHCCCC TRSRAAIGWTPLTRDGGQQLGRKFQLYDMTSDRSVNFR CCCCEEECCCCCCCCCHHHHCCEEEEEECCCCCCCCCC >Mature Secondary Structure MKKRHLLSLLALGISMACYGETYPAPIGPSQSDFGGVGLLQTPTARMAREGELSLNYRDN CCHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCEEECCHHHHCCCCCEEEEECCC DQYRYYSASVQLFPWLETTLRYTDVRTRQYSSVEAFSGDQTYKDKAFDLKLRLWEESYWL CCEEEEEEEEEEEECHHHHHHHHHCCHHCCCCCEECCCCCCCCCCEEEEEEEEECCCCCC PQVAVGARDIGGTGLFDAEYLVASKAWGPFDFTLGLGWGYLGTSGNVKNPLCSASDKYCY CHHCCCCCCCCCCCCCCCHHHEEECCCCCEEEEEECCCEEECCCCCCCCCCCCCCCCEEE RDNSYKQAGSIDGSQMFHGPASLFGGVEYQTPWQPLRLKLEYEGNNYQQDFAGKLEQKSK CCCCCCCCCCCCCHHHCCCHHHHHCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHCCC FNVGAIYRVTDWADVNLSYERGNTFMFGVTLRTNFNDLRPSYNDNARPQYQPQPQDAILQ CCCEEEEEEECEEEEEEEEECCCEEEEEEEEECCCHHCCCCCCCCCCCCCCCCCHHHHHH HSVVANQLTLLKYNVGLADPQIQAKGDTLYVTGEQVKYRDSREGIIRANRIVMNDLPDGI HHHHHCEEEEEEEECCCCCCCEEECCCEEEEECCCEEECCCCCCEEEECEEEECCCCCCC KTIRITENRLNMPQVTTETDVASLKNHLAGEPLGHETKLAQKRVEPVVPQSTEQGWYIDK EEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEC SRFDFHIDPVLNQSVGGPENFYMYQLGVMGMADLWLTDHLLTTGSLFANLANNYDKFNYT CCCCEEECCHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC NPPQDSHLPRVRTHVREYVQNDVYVNNLQANYFQHLGNGFYGQVYGGYLETMFGGAGAEV CCCCCCCCCHHHHHHHHHHHCCEEEECCHHHHHHHHCCCCEEHHHHHHHHHHHCCCCCEE LYRPLDSNWAFGLDANYVKQRDWRSAKDMMKFTDYSVKTGHLTAYWTPSFAQDVLVKASV EEEECCCCEEECCCCHHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCHHHHHHHHHHHH GQYLAGDKGGTLEIAKRFDSGVVVGGYATITNVLKEEYGEGDFTKGVYVSVPLDLFSSGP CHHHCCCCCCEEHHHHHCCCCEEEEHHHHHHHHHHHHCCCCCCCCCEEEEECHHHHCCCC TRSRAAIGWTPLTRDGGQQLGRKFQLYDMTSDRSVNFR CCCCEEECCCCCCCCCHHHHCCEEEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8265357; 9278503 [H]