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The map label for this gene is hemE [H]

Identifier: 82546339

GI number: 82546339

Start: 4056140

End: 4057204

Strand: Direct

Name: hemE [H]

Synonym: SBO_4018

Alternate gene names: 82546339

Gene position: 4056140-4057204 (Clockwise)

Preceding gene: 82546338

Following gene: 161984805

Centisome position: 89.74

GC content: 55.77

Gene sequence:

>1065_bases
ATGACCGAACTTAAAAACGATCGTTATCTGCGGGCGCTGCTGCGCCAGCCCGTTGATGTCACTCCAGTATGGATGATGCG
CCAGGCGGGTCGCTATCTACCGGAATATAAAGTCACGCGCGCCCAGGCGGGCGATTTTATGTCGCTGTGCAAAAACGCCG
AGCTGGCGTGCGAAGTGACTTTGCAACCGCTGCGTCGCTACCCGCTGGATGCGGCGATCCTCTTTTCCGATATCCTCACC
GTGCCGGACGCGATGGGGTTAGGGCTCTATTTTGAAGCCGGAGAAGGTCCGCGTTTTACCTCGCCAGTCACCTGCAAAGC
CGACGTCGATAAGCTGCCAATTCCGGACCCGGAAGATGAGCTGGGTTACGTGATGAACGCGGTGCGTACCATTCGTCGCG
AACTGAAAGGCGAAGTGCCGCTGATTGGTTTTTCCGGCAGCCCGTGGACGCTGGCAACCTACATGGTGGAAGGCGGCAGC
AGCAAAGCCTTCACCGTGATCAAAAAAATGATGTATGCCGATCCGCAGGCGCTGCACGCTCTACTCGATAAACTGGCGAA
AAGCGTCACTTTGTATCTGAATGCGCAGATTAAAGCCGGTGCTCAGGCAGTGATGATTTTCGACACCTGGGGCGGTGTGC
TTACCGGGCGCGATTATCAACAGTTCTCGCTCTATTACATGCATAAAATTGTTGATGGTTTACTGCGTGAAAACGACGGT
CGCCGCGTACCGGTCACGCTGTTTACCAAAGGCGGCGGACAGTGGCTGGAAGCGATGGCAGAAACCGGTTGCGATGCGTT
GGGCCTCGACTGGACAACGGATATCGCCGATGCGCGCCGCCGTGTGGGCAATAAAGTCGCGTTGCAGGGTAATATGGATC
CGTCGATGCTGTACGCGCCGCCTGCCCGCATTGAAGAAGAAGTAGCGACTATACTTGCAGGTTTCGGTCACGGCGAAGGT
CATGTCTTTAACCTTGGTCACGGCATTCATCAGGATGTGCCGCCAGAACATGCTGGCGTGTTCGTGGAGGCAGTGCATCG
ACTGTCTGAACAATATCACCGCTAA

Upstream 100 bases:

>100_bases
CACCGTAGCGCGCCGTCTGATAGAAGATACTGTGGCGATGTGTCGGGCAGAGTATGAGTGATGATACACTGACCGCCTGA
CGCACTAAGGAACAGCCAAA

Downstream 100 bases:

>100_bases
GGAGTGATTATGGATCTCGCGTCATTACGCGCTCAACAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGA
TAAAGATCCACCGGATCTGA

Product: uroporphyrinogen decarboxylase

Products: NA

Alternate protein names: UPD; URO-D [H]

Number of amino acids: Translated: 354; Mature: 353

Protein sequence:

>354_residues
MTELKNDRYLRALLRQPVDVTPVWMMRQAGRYLPEYKVTRAQAGDFMSLCKNAELACEVTLQPLRRYPLDAAILFSDILT
VPDAMGLGLYFEAGEGPRFTSPVTCKADVDKLPIPDPEDELGYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGS
SKAFTVIKKMMYADPQALHALLDKLAKSVTLYLNAQIKAGAQAVMIFDTWGGVLTGRDYQQFSLYYMHKIVDGLLRENDG
RRVPVTLFTKGGGQWLEAMAETGCDALGLDWTTDIADARRRVGNKVALQGNMDPSMLYAPPARIEEEVATILAGFGHGEG
HVFNLGHGIHQDVPPEHAGVFVEAVHRLSEQYHR

Sequences:

>Translated_354_residues
MTELKNDRYLRALLRQPVDVTPVWMMRQAGRYLPEYKVTRAQAGDFMSLCKNAELACEVTLQPLRRYPLDAAILFSDILT
VPDAMGLGLYFEAGEGPRFTSPVTCKADVDKLPIPDPEDELGYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGS
SKAFTVIKKMMYADPQALHALLDKLAKSVTLYLNAQIKAGAQAVMIFDTWGGVLTGRDYQQFSLYYMHKIVDGLLRENDG
RRVPVTLFTKGGGQWLEAMAETGCDALGLDWTTDIADARRRVGNKVALQGNMDPSMLYAPPARIEEEVATILAGFGHGEG
HVFNLGHGIHQDVPPEHAGVFVEAVHRLSEQYHR
>Mature_353_residues
TELKNDRYLRALLRQPVDVTPVWMMRQAGRYLPEYKVTRAQAGDFMSLCKNAELACEVTLQPLRRYPLDAAILFSDILTV
PDAMGLGLYFEAGEGPRFTSPVTCKADVDKLPIPDPEDELGYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGSS
KAFTVIKKMMYADPQALHALLDKLAKSVTLYLNAQIKAGAQAVMIFDTWGGVLTGRDYQQFSLYYMHKIVDGLLRENDGR
RVPVTLFTKGGGQWLEAMAETGCDALGLDWTTDIADARRRVGNKVALQGNMDPSMLYAPPARIEEEVATILAGFGHGEGH
VFNLGHGIHQDVPPEHAGVFVEAVHRLSEQYHR

Specific function: Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III [H]

COG id: COG0407

COG function: function code H; Uroporphyrinogen-III decarboxylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the uroporphyrinogen decarboxylase family [H]

Homologues:

Organism=Homo sapiens, GI71051616, Length=353, Percent_Identity=48.4419263456091, Blast_Score=315, Evalue=5e-86,
Organism=Escherichia coli, GI2367337, Length=354, Percent_Identity=99.7175141242938, Blast_Score=732, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6320252, Length=356, Percent_Identity=38.2022471910112, Blast_Score=259, Evalue=4e-70,
Organism=Drosophila melanogaster, GI19921920, Length=347, Percent_Identity=42.3631123919308, Blast_Score=283, Evalue=1e-76,
Organism=Drosophila melanogaster, GI221330099, Length=347, Percent_Identity=42.3631123919308, Blast_Score=283, Evalue=2e-76,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006361
- InterPro:   IPR000257 [H]

Pfam domain/function: PF01208 URO-D [H]

EC number: =4.1.1.37 [H]

Molecular weight: Translated: 39277; Mature: 39145

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: PS00906 UROD_1 ; PS00907 UROD_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTELKNDRYLRALLRQPVDVTPVWMMRQAGRYLPEYKVTRAQAGDFMSLCKNAELACEVT
CCCCCCHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHCCHHHHHHCCCCEEEEEE
LQPLRRYPLDAAILFSDILTVPDAMGLGLYFEAGEGPRFTSPVTCKADVDKLPIPDPEDE
HHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCEEECCCCCCCCCCCCCHH
LGYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTVIKKMMYADPQALHA
HHHHHHHHHHHHHHHCCCCCEEECCCCCCEEEEEEEECCCCHHHHHHHHHHHCCHHHHHH
LLDKLAKSVTLYLNAQIKAGAQAVMIFDTWGGVLTGRDYQQFSLYYMHKIVDGLLRENDG
HHHHHHHHEEEEEEEEECCCCEEEEEEECCCCEECCCCHHHHHHHHHHHHHHHHHHCCCC
RRVPVTLFTKGGGQWLEAMAETGCDALGLDWTTDIADARRRVGNKVALQGNMDPSMLYAP
CEEEEEEEECCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCEEECC
PARIEEEVATILAGFGHGEGHVFNLGHGIHQDVPPEHAGVFVEAVHRLSEQYHR
CHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TELKNDRYLRALLRQPVDVTPVWMMRQAGRYLPEYKVTRAQAGDFMSLCKNAELACEVT
CCCCCHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHCCHHHHHHCCCCEEEEEE
LQPLRRYPLDAAILFSDILTVPDAMGLGLYFEAGEGPRFTSPVTCKADVDKLPIPDPEDE
HHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCEEECCCCCCCCCCCCCHH
LGYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTVIKKMMYADPQALHA
HHHHHHHHHHHHHHHCCCCCEEECCCCCCEEEEEEEECCCCHHHHHHHHHHHCCHHHHHH
LLDKLAKSVTLYLNAQIKAGAQAVMIFDTWGGVLTGRDYQQFSLYYMHKIVDGLLRENDG
HHHHHHHHEEEEEEEEECCCCEEEEEEECCCCEECCCCHHHHHHHHHHHHHHHHHHCCCC
RRVPVTLFTKGGGQWLEAMAETGCDALGLDWTTDIADARRRVGNKVALQGNMDPSMLYAP
CEEEEEEEECCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCEEECC
PARIEEEVATILAGFGHGEGHVFNLGHGIHQDVPPEHAGVFVEAVHRLSEQYHR
CHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA