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The map label for this gene is yjaE [H]

Identifier: 82546337

GI number: 82546337

Start: 4054756

End: 4055232

Strand: Reverse

Name: yjaE [H]

Synonym: SBO_4016

Alternate gene names: 82546337

Gene position: 4055232-4054756 (Counterclockwise)

Preceding gene: 161984804

Following gene: 82546336

Centisome position: 89.72

GC content: 49.27

Gene sequence:

>477_bases
ATGCTTAACCAGCTCGATAACCTGACGGAGCGCGTCAGAGGAAGTAACAAACTGGTTGATCGCTGGCTACATGTACGTAA
GCATCTGCTCGTGGCTTACTACAATCTGGTTGGCATTAAGCCTGGCAAAGAATCGTACATGAGGCTAAACGAAAAAGCCC
TTGATGATTTTTGTCAGAGCCTGGTCGATTACTTGTCTGCCGGACATTTCAGTATTTATGAGCGCATTCTTCATAAGCTG
GAAGGCAACGGGCAACTCGCGCGCGCCGCGAAGATTTGGCCGCAACTCGAAGCCAATACCCAACAGATTATGGATTACTA
CGATTCCAGCCTGGAAACCGCCATCGATCATGATAATTACCTTGAGTTTCAAAAGGTTTTATCTGACATCGGCGAGGCGC
TGGAAGCGCGCTTTGTGCTGGAAGATAAGCTGATTCTGCTGGTGCTTGACGCCGCCCGCGTCAAACATCCTGCTTGA

Upstream 100 bases:

>100_bases
ATCCATAGCTCTTGCACTACCTTTGCATCACTGGCATGTTTAACATGGTTTTTACATTTCTCACTGAGCAGTTTTTGAAT
ACAAACTTGCGGAGTCAATC

Downstream 100 bases:

>100_bases
GTTCTGCGCTGTTAACGCGTAATTTACATTCAACGCCCCGTTTGTGGGGGCTAATTTCTTGTCGGAGTGCCTTAACTGGC
TGAGACCGTTTATTCGGGAT

Product: anti-RNA polymerase sigma 70 factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQSLVDYLSAGHFSIYERILHKL
EGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNYLEFQKVLSDIGEALEARFVLEDKLILLVLDAARVKHPA

Sequences:

>Translated_158_residues
MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQSLVDYLSAGHFSIYERILHKL
EGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNYLEFQKVLSDIGEALEARFVLEDKLILLVLDAARVKHPA
>Mature_158_residues
MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQSLVDYLSAGHFSIYERILHKL
EGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNYLEFQKVLSDIGEALEARFVLEDKLILLVLDAARVKHPA

Specific function: Has binding activity to the major sigma subunit of RNA polymerase. May be involved in replacement of the RNA polymerase sigma subunit from sigma-70 to sigma-S during the transition from exponential growth to the stationary phase [H]

COG id: COG3160

COG function: function code K; Regulator of sigma D

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Rsd/AlgQ family [H]

Homologues:

Organism=Escherichia coli, GI1790428, Length=158, Percent_Identity=99.3670886075949, Blast_Score=323, Evalue=4e-90,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007448 [H]

Pfam domain/function: PF04353 Rsd_AlgQ [H]

EC number: NA

Molecular weight: Translated: 18243; Mature: 18243

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS
CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY
HHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHH
LEFQKVLSDIGEALEARFVLEDKLILLVLDAARVKHPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHCCCCC
>Mature Secondary Structure
MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS
CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY
HHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHH
LEFQKVLSDIGEALEARFVLEDKLILLVLDAARVKHPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA