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The map label for this gene is yiiR [H]

Identifier: 82546270

GI number: 82546270

Start: 3965890

End: 3966330

Strand: Direct

Name: yiiR [H]

Synonym: SBO_3938

Alternate gene names: 82546270

Gene position: 3965890-3966330 (Clockwise)

Preceding gene: 82546267

Following gene: 82546271

Centisome position: 87.74

GC content: 48.53

Gene sequence:

>441_bases
ATGACCATACAGCAATGGTTATTCTCATTTAAAGGGCGTATTGGACGCCGTGATTTCTGGATTTGGATAGGCCTGTGGTT
CGCAGGCATGCTGGTGCTTTTCTCACTGGCGGGTAAAAATTTACTCGATATTCAGACCGCGGCGTTTTGCCTTGTGTGCT
TGCTTTGGCCAACAGCGGCAGTAACTGTTAAGCGCTTGCATGATCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATT
GTGGCGTGGATGCTGCTGGCGGGTAACTGGGCGATTTTACCGGGTGTCTGGCAATGGGCGGTGGGGTGTTTTGTCCCGAC
GTTGATTCTGGTGATGATGCTTATCGATCTTGGTGCGTTTGTTGGCACACAAGGCGAAAATAAATATGGTAAAGATACTC
AGGATGTGAAGTATAAAGCCGACAATAAATCAAGTAATTAA

Upstream 100 bases:

>100_bases
TGACAGTACCTTTTGTTATGACTGGCTCCGATTAAAACGATATCTGTCGCCCTTGTCAAAAGGGTAGAATCCTGGAAAAG
ACAACCATCAAGGAACTTAC

Downstream 100 bases:

>100_bases
CCTTTAATATATCTCTTACTGCTATTTTTTTCCGGGATTGTTATTTCCACGATGCAAATGACAATACCCGGAAAATCCTT
CTGAACTCTTCACCTTAAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 146; Mature: 145

Protein sequence:

>146_residues
MTIQQWLFSFKGRIGRRDFWIWIGLWFAGMLVLFSLAGKNLLDIQTAAFCLVCLLWPTAAVTVKRLHDRGRSGAWAFLMI
VAWMLLAGNWAILPGVWQWAVGCFVPTLILVMMLIDLGAFVGTQGENKYGKDTQDVKYKADNKSSN

Sequences:

>Translated_146_residues
MTIQQWLFSFKGRIGRRDFWIWIGLWFAGMLVLFSLAGKNLLDIQTAAFCLVCLLWPTAAVTVKRLHDRGRSGAWAFLMI
VAWMLLAGNWAILPGVWQWAVGCFVPTLILVMMLIDLGAFVGTQGENKYGKDTQDVKYKADNKSSN
>Mature_145_residues
TIQQWLFSFKGRIGRRDFWIWIGLWFAGMLVLFSLAGKNLLDIQTAAFCLVCLLWPTAAVTVKRLHDRGRSGAWAFLMIV
AWMLLAGNWAILPGVWQWAVGCFVPTLILVMMLIDLGAFVGTQGENKYGKDTQDVKYKADNKSSN

Specific function: Unknown

COG id: COG3152

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790355, Length=146, Percent_Identity=99.3150684931507, Blast_Score=290, Evalue=2e-80,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008523 [H]

Pfam domain/function: PF05656 DUF805 [H]

EC number: NA

Molecular weight: Translated: 16489; Mature: 16358

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIQQWLFSFKGRIGRRDFWIWIGLWFAGMLVLFSLAGKNLLDIQTAAFCLVCLLWPTAA
CCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
VTVKRLHDRGRSGAWAFLMIVAWMLLAGNWAILPGVWQWAVGCFVPTLILVMMLIDLGAF
HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGTQGENKYGKDTQDVKYKADNKSSN
HCCCCCCCCCCCCCCCEEECCCCCCC
>Mature Secondary Structure 
TIQQWLFSFKGRIGRRDFWIWIGLWFAGMLVLFSLAGKNLLDIQTAAFCLVCLLWPTAA
CHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
VTVKRLHDRGRSGAWAFLMIVAWMLLAGNWAILPGVWQWAVGCFVPTLILVMMLIDLGAF
HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGTQGENKYGKDTQDVKYKADNKSSN
HCCCCCCCCCCCCCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]