| Definition | Shigella boydii Sb227, complete genome. |
|---|---|
| Accession | NC_007613 |
| Length | 4,519,823 |
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The map label for this gene is yhiS [H]
Identifier: 82545870
GI number: 82545870
Start: 3498055
End: 3498849
Strand: Direct
Name: yhiS [H]
Synonym: SBO_3504
Alternate gene names: 82545870
Gene position: 3498055-3498849 (Clockwise)
Preceding gene: 82545867
Following gene: 82545871
Centisome position: 77.39
GC content: 34.84
Gene sequence:
>795_bases ATGTCAATTGACTTTACCCCAGGTATAATAAATACATATCACGGCAATATTTATAACTGCACAACAAATACCGATAATGT TAAAACGCCAGACACACCGAAGTGGCCTTGTGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAG GATACAACCCTGAACAATTTGATTTAGCGCAACAACAACTCCAACAAATTAATGCATGCCACACGAACACCACATATACA AATGCAGACTACTCAAAAGTTGTGGTTCAACTTGTAAGTCTTATTAATAACATTGAAACGATAAGTTCGACACCACTTAC GCAACAGACACAATCAATACTTAATCAGATTAATAACATTAGATATGAAAAAAACAAAAGTGCTGAATGTCGAATCATTG TTGTCGCTAATCCTAAACCCGACAAGGCAATCATAACTAAAATTAGCGTAGAAGAGGGAATACCCATAACATTCAGTGTC CAAACCATGTTTTCAGATACTAATTTTATTGCTGAACAACGAGCTGACTTACCAACTAATATAAAAGATATTCAAAGCCT GTATCAAAAAATGACGAAGTTATATATTGAGCACAGTGAAAATAAAAACAGGATGAAAGTCTTTGCCGGAACCAACTTTA TTGATTTCAATATGACAGGACAGAACCTTTCCGGGTTCGTTCTAACCTTGTCAAGGTTTTATTTCGAAGATCTACTTAAT ATAAATTTCACTGACGCAAATTTAGGTGACACTATTTTTTACATAAAGAACACCCTACCCCCCCAAATTATATAA
Upstream 100 bases:
>100_bases TAACGCATTATATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAAAACCTTAGCATAAAACA GATGATGAATAAGGAATGTT
Downstream 100 bases:
>100_bases AGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACTTTTTACGAGCAA AAGCGGAAATTGCTTCGACA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 264; Mature: 263
Protein sequence:
>264_residues MSIDFTPGIINTYHGNIYNCTTNTDNVKTPDTPKWPCDNWEEQQPINSTFSGEGYNPEQFDLAQQQLQQINACHTNTTYT NADYSKVVVQLVSLINNIETISSTPLTQQTQSILNQINNIRYEKNKSAECRIIVVANPKPDKAIITKISVEEGIPITFSV QTMFSDTNFIAEQRADLPTNIKDIQSLYQKMTKLYIEHSENKNRMKVFAGTNFIDFNMTGQNLSGFVLTLSRFYFEDLLN INFTDANLGDTIFYIKNTLPPQII
Sequences:
>Translated_264_residues MSIDFTPGIINTYHGNIYNCTTNTDNVKTPDTPKWPCDNWEEQQPINSTFSGEGYNPEQFDLAQQQLQQINACHTNTTYT NADYSKVVVQLVSLINNIETISSTPLTQQTQSILNQINNIRYEKNKSAECRIIVVANPKPDKAIITKISVEEGIPITFSV QTMFSDTNFIAEQRADLPTNIKDIQSLYQKMTKLYIEHSENKNRMKVFAGTNFIDFNMTGQNLSGFVLTLSRFYFEDLLN INFTDANLGDTIFYIKNTLPPQII >Mature_263_residues SIDFTPGIINTYHGNIYNCTTNTDNVKTPDTPKWPCDNWEEQQPINSTFSGEGYNPEQFDLAQQQLQQINACHTNTTYTN ADYSKVVVQLVSLINNIETISSTPLTQQTQSILNQINNIRYEKNKSAECRIIVVANPKPDKAIITKISVEEGIPITFSVQ TMFSDTNFIAEQRADLPTNIKDIQSLYQKMTKLYIEHSENKNRMKVFAGTNFIDFNMTGQNLSGFVLTLSRFYFEDLLNI NFTDANLGDTIFYIKNTLPPQII
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30065; Mature: 29934
Theoretical pI: Translated: 4.65; Mature: 4.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIDFTPGIINTYHGNIYNCTTNTDNVKTPDTPKWPCDNWEEQQPINSTFSGEGYNPEQF CCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH DLAQQQLQQINACHTNTTYTNADYSKVVVQLVSLINNIETISSTPLTQQTQSILNQINNI HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC RYEKNKSAECRIIVVANPKPDKAIITKISVEEGIPITFSVQTMFSDTNFIAEQRADLPTN EECCCCCCCEEEEEEECCCCCCEEEEEEECCCCCCEEEEEHEECCCCHHHHHHHCCCCCC IKDIQSLYQKMTKLYIEHSENKNRMKVFAGTNFIDFNMTGQNLSGFVLTLSRFYFEDLLN HHHHHHHHHHHHHHHHHCCCCCCEEEEEECCEEEEEEECCCCCCHHHHHHHHHHHHHHHC INFTDANLGDTIFYIKNTLPPQII CCCCCCCCCCEEEEEECCCCCCCC >Mature Secondary Structure SIDFTPGIINTYHGNIYNCTTNTDNVKTPDTPKWPCDNWEEQQPINSTFSGEGYNPEQF CCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH DLAQQQLQQINACHTNTTYTNADYSKVVVQLVSLINNIETISSTPLTQQTQSILNQINNI HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC RYEKNKSAECRIIVVANPKPDKAIITKISVEEGIPITFSVQTMFSDTNFIAEQRADLPTN EECCCCCCCEEEEEEECCCCCCEEEEEEECCCCCCEEEEEHEECCCCHHHHHHHCCCCCC IKDIQSLYQKMTKLYIEHSENKNRMKVFAGTNFIDFNMTGQNLSGFVLTLSRFYFEDLLN HHHHHHHHHHHHHHHHHCCCCCCEEEEEECCEEEEEEECCCCCCHHHHHHHHHHHHHHHC INFTDANLGDTIFYIKNTLPPQII CCCCCCCCCCEEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8041620; 9278503 [H]