| Definition | Shigella boydii Sb227, complete genome. |
|---|---|
| Accession | NC_007613 |
| Length | 4,519,823 |
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The map label for this gene is yhiI [H]
Identifier: 82545848
GI number: 82545848
Start: 3473046
End: 3474113
Strand: Reverse
Name: yhiI [H]
Synonym: SBO_3482
Alternate gene names: 82545848
Gene position: 3474113-3473046 (Counterclockwise)
Preceding gene: 82545849
Following gene: 82545847
Centisome position: 76.86
GC content: 59.08
Gene sequence:
>1068_bases ATGGATAAGAGTAAGCGCCATCTGGCGTGGTGGGTTGTCGGGGCACTGGCGGTGGCTGCCGTCGTGGCGTGGTGGCTGTT GCGCCCGGCGGGTGTGCCGGAAGGCTTTGCTGTCAGCAATGGGCGCATTGAAGCGACGGAAGTGGATATCGCCAGCAAAA TTGCCGGGCGTATCGACACCATTCTGGTGAAAGAAGGCCAGTTTGTTCGCGAAGGTGAAGTGCTGGCGAAGATGGATACT CGTGTGTTGCAGGAACAGCGACTGGAAGCCATCGCGCAAATCAAAGAGGCACAAAGCGCCGTTGCCGCCGCGCAGGCTTT GCTGGAGCAACGACAAAGCGAAACTCGCGCCGCGCAGTCGCTGGTTAATCAACGCCAGGCAGAACTGGACTCCGTAGCAA AACGTCATATGCGTTCCCGTTCACTGGCCCAACGAGGGGCTATTTCTGCGCAACAGCTGGATGACGACCGCGCCGCCGCT GAGAGCGCCCGAGCTGCGCTGGAATCGGCAAAAGCTCAGGTTTCTGCTTCTAAAGCCGCTATAGAGGCGGCACGTACCAA TATCATTCAGGCGCAAACCCGCGTCGAAGCGGCACAAGCCACTGAACGGCGCATTGCCGCAGATATCGATGACAGCGAAC TGAAAGCCCCGCGTGACGGACGCGTGCAGTATCGGGTTGCCGAGCCAGGGGAAGTGCTGGCGGCAGGCGGTCGGGTGCTG AATATGGTCGATCTCAGCGACGTCTATATGACTTTCTTCCTGCCAACCGAACAGGCGGGCACGCTAAAACTGGGCGGTGA AGCACGGCTGATCCTCGATGCCGCGCCAGATCTGCGTATTCCGGCGACCATCAGTTTTGTCGCCAGCGTCGCCCAGTTCA CGCCAAAAACCGTCGAAACCAGCGATGAACGGCTGAAACTGATGTTCCGCGTCAAAGCGCGTATCCCACCGGAATTACTC CAGCAGCATCTGGAATATGTCAAAACGGGCTTGCCGGGCGTAGCGTGGGTGCGGGTGAATGAAGAACTTCCGTGGCCTGA CGACCTGGTGGTGAGGTTGCCGCAATGA
Upstream 100 bases:
>100_bases GTCGTTTCCTTCTTATCCCGGATGGAAGAATCCGCTGAACGTCGTTCGGCGGCAGTTGTAACACGCGTCGTTTGCTTACA GGGATTATGGCGGGCCGATT
Downstream 100 bases:
>100_bases CGCATCTGGAACTGGTTCCCGTCCCGCCTGTCGCGCAACTGGCGGGCGTGAGCCAGCATTATGGAAAAACCGTTGCGCTG AACAATATCACTCTCGATAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 355; Mature: 355
Protein sequence:
>355_residues MDKSKRHLAWWVVGALAVAAVVAWWLLRPAGVPEGFAVSNGRIEATEVDIASKIAGRIDTILVKEGQFVREGEVLAKMDT RVLQEQRLEAIAQIKEAQSAVAAAQALLEQRQSETRAAQSLVNQRQAELDSVAKRHMRSRSLAQRGAISAQQLDDDRAAA ESARAALESAKAQVSASKAAIEAARTNIIQAQTRVEAAQATERRIAADIDDSELKAPRDGRVQYRVAEPGEVLAAGGRVL NMVDLSDVYMTFFLPTEQAGTLKLGGEARLILDAAPDLRIPATISFVASVAQFTPKTVETSDERLKLMFRVKARIPPELL QQHLEYVKTGLPGVAWVRVNEELPWPDDLVVRLPQ
Sequences:
>Translated_355_residues MDKSKRHLAWWVVGALAVAAVVAWWLLRPAGVPEGFAVSNGRIEATEVDIASKIAGRIDTILVKEGQFVREGEVLAKMDT RVLQEQRLEAIAQIKEAQSAVAAAQALLEQRQSETRAAQSLVNQRQAELDSVAKRHMRSRSLAQRGAISAQQLDDDRAAA ESARAALESAKAQVSASKAAIEAARTNIIQAQTRVEAAQATERRIAADIDDSELKAPRDGRVQYRVAEPGEVLAAGGRVL NMVDLSDVYMTFFLPTEQAGTLKLGGEARLILDAAPDLRIPATISFVASVAQFTPKTVETSDERLKLMFRVKARIPPELL QQHLEYVKTGLPGVAWVRVNEELPWPDDLVVRLPQ >Mature_355_residues MDKSKRHLAWWVVGALAVAAVVAWWLLRPAGVPEGFAVSNGRIEATEVDIASKIAGRIDTILVKEGQFVREGEVLAKMDT RVLQEQRLEAIAQIKEAQSAVAAAQALLEQRQSETRAAQSLVNQRQAELDSVAKRHMRSRSLAQRGAISAQQLDDDRAAA ESARAALESAKAQVSASKAAIEAARTNIIQAQTRVEAAQATERRIAADIDDSELKAPRDGRVQYRVAEPGEVLAAGGRVL NMVDLSDVYMTFFLPTEQAGTLKLGGEARLILDAAPDLRIPATISFVASVAQFTPKTVETSDERLKLMFRVKARIPPELL QQHLEYVKTGLPGVAWVRVNEELPWPDDLVVRLPQ
Specific function: Unknown
COG id: COG0845
COG function: function code M; Membrane-fusion protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1789900, Length=355, Percent_Identity=98.8732394366197, Blast_Score=694, Evalue=0.0, Organism=Escherichia coli, GI1787013, Length=277, Percent_Identity=30.3249097472924, Blast_Score=104, Evalue=9e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003997 - InterPro: IPR006143 [H]
Pfam domain/function: PF00529 HlyD [H]
EC number: NA
Molecular weight: Translated: 38803; Mature: 38803
Theoretical pI: Translated: 6.84; Mature: 6.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKSKRHLAWWVVGALAVAAVVAWWLLRPAGVPEGFAVSNGRIEATEVDIASKIAGRIDT CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCEEEEHHHHHHHHHHHHHHE ILVKEGQFVREGEVLAKMDTRVLQEQRLEAIAQIKEAQSAVAAAQALLEQRQSETRAAQS EEECCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LVNQRQAELDSVAKRHMRSRSLAQRGAISAQQLDDDRAAAESARAALESAKAQVSASKAA HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH IEAARTNIIQAQTRVEAAQATERRIAADIDDSELKAPRDGRVQYRVAEPGEVLAAGGRVL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCEEEEECCCCHHHHCCCCEE NMVDLSDVYMTFFLPTEQAGTLKLGGEARLILDAAPDLRIPATISFVASVAQFTPKTVET EEEEHHHEEEEEEECCCCCCEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCC SDERLKLMFRVKARIPPELLQQHLEYVKTGLPGVAWVRVNEELPWPDDLVVRLPQ CHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHEEECCC >Mature Secondary Structure MDKSKRHLAWWVVGALAVAAVVAWWLLRPAGVPEGFAVSNGRIEATEVDIASKIAGRIDT CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCEEEEHHHHHHHHHHHHHHE ILVKEGQFVREGEVLAKMDTRVLQEQRLEAIAQIKEAQSAVAAAQALLEQRQSETRAAQS EEECCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LVNQRQAELDSVAKRHMRSRSLAQRGAISAQQLDDDRAAAESARAALESAKAQVSASKAA HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH IEAARTNIIQAQTRVEAAQATERRIAADIDDSELKAPRDGRVQYRVAEPGEVLAAGGRVL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCEEEEECCCCHHHHCCCCEE NMVDLSDVYMTFFLPTEQAGTLKLGGEARLILDAAPDLRIPATISFVASVAQFTPKTVET EEEEHHHEEEEEEECCCCCCEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCC SDERLKLMFRVKARIPPELLQQHLEYVKTGLPGVAWVRVNEELPWPDDLVVRLPQ CHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8041620; 9278503 [H]