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The map label for this gene is yrfD [H]

Identifier: 82545750

GI number: 82545750

Start: 3363997

End: 3364803

Strand: Reverse

Name: yrfD [H]

Synonym: SBO_3382

Alternate gene names: 82545750

Gene position: 3364803-3363997 (Counterclockwise)

Preceding gene: 82545752

Following gene: 82545749

Centisome position: 74.45

GC content: 57.0

Gene sequence:

>807_bases
GTGACGGGTGATAAGGAGATCATCACAATGGCATTTAAGATCTGGCAAATTGGTTTGCATTTACAACAGCAAGAAGCGGT
AGCGGTTGCGATCGTGCGGGGCGCAAAAGAATGCTTTTTGCAACGCTGGTGGCGGTTGCCGCTGGAGAACGACATTATCA
AAGATGGGCGGATTGTTGATGCGCAGCAGCTGGCTAAAACGTTGTTACCTTGGAGTCGCGAACTGCCGCAGCGTCATCAC
ATTATGTTGGCGTTTCCCGCCAGTCGCACATTACAGCGGTCATTTCCGCGCCCGTCGATGTCCCTTGGTGAGCGGGAGCA
AACGGCCTGGCTGTCAGGGACGATGGCCCGCGAGCTGGATATGGATCCGGACTCCCTGCGCTTCGATTACAGCGAAGACT
CACTCAGTCCCGCCTATAACGTGACTGCCGCGCAAAGCAAAGAGCTGGCAACGCTGCTTACTCTGGCAGAAAGGTTGCGT
GTTCATGTTAGTGCGATCACCCCGGATGCCAGTGCATTACAGCGATTCCTGCCTTTTTTACCTTCTCATCAGCAATGTCT
GGCCTGGCGTGATAACGAACAGTGGCTGTGGGCGACGCGCTATAGCTGGGGGCGCAAACTGGCGGTGGGGATGACTAGCG
CGAAGGAGCTGGCGGCAGCGTTATTCGTTGATCCCGACAGCGTCGCGATATGTGGCGAAGGCGGATTTGACCCCTGGGAG
GCCGTTTCTGTTCGTCAGCCGCTGCTACCGCCGCCTGGTGGAGACTTTGCCATCGCGCTGGGGCTGGCGCTTGGGAAGGC
GTACTGA

Upstream 100 bases:

>100_bases
AACTTCACTGGAAATTTCCCATTTAGTTTCATTTGGGCAGTTTATAAACAAACGCGCGGTAGTATAAAGGCAAGCCAGAC
GCATTGATATACCCGTCAGA

Downstream 100 bases:

>100_bases
TGAACCCGCCAATTAATTTTTTGCCCTGGCGACAGCAACGCCGGACCGCTTTTCTGCGTTTCTGGTTGCTGATGTTCGTT
GCGCCTCTGCTGCTGGCCGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 267

Protein sequence:

>268_residues
MTGDKEIITMAFKIWQIGLHLQQQEAVAVAIVRGAKECFLQRWWRLPLENDIIKDGRIVDAQQLAKTLLPWSRELPQRHH
IMLAFPASRTLQRSFPRPSMSLGEREQTAWLSGTMARELDMDPDSLRFDYSEDSLSPAYNVTAAQSKELATLLTLAERLR
VHVSAITPDASALQRFLPFLPSHQQCLAWRDNEQWLWATRYSWGRKLAVGMTSAKELAAALFVDPDSVAICGEGGFDPWE
AVSVRQPLLPPPGGDFAIALGLALGKAY

Sequences:

>Translated_268_residues
MTGDKEIITMAFKIWQIGLHLQQQEAVAVAIVRGAKECFLQRWWRLPLENDIIKDGRIVDAQQLAKTLLPWSRELPQRHH
IMLAFPASRTLQRSFPRPSMSLGEREQTAWLSGTMARELDMDPDSLRFDYSEDSLSPAYNVTAAQSKELATLLTLAERLR
VHVSAITPDASALQRFLPFLPSHQQCLAWRDNEQWLWATRYSWGRKLAVGMTSAKELAAALFVDPDSVAICGEGGFDPWE
AVSVRQPLLPPPGGDFAIALGLALGKAY
>Mature_267_residues
TGDKEIITMAFKIWQIGLHLQQQEAVAVAIVRGAKECFLQRWWRLPLENDIIKDGRIVDAQQLAKTLLPWSRELPQRHHI
MLAFPASRTLQRSFPRPSMSLGEREQTAWLSGTMARELDMDPDSLRFDYSEDSLSPAYNVTAAQSKELATLLTLAERLRV
HVSAITPDASALQRFLPFLPSHQQCLAWRDNEQWLWATRYSWGRKLAVGMTSAKELAAALFVDPDSVAICGEGGFDPWEA
VSVRQPLLPPPGGDFAIALGLALGKAY

Specific function: Required for the use of extracellular DNA as a nutrient [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082257, Length=259, Percent_Identity=98.8416988416988, Blast_Score=520, Evalue=1e-149,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30052; Mature: 29921

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGDKEIITMAFKIWQIGLHLQQQEAVAVAIVRGAKECFLQRWWRLPLENDIIKDGRIVD
CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEC
AQQLAKTLLPWSRELPQRHHIMLAFPASRTLQRSFPRPSMSLGEREQTAWLSGTMARELD
HHHHHHHHCCHHHCCCCCCEEEEEECCCHHHHHHCCCCCCCCCCCHHHHHHHCHHHHHCC
MDPDSLRFDYSEDSLSPAYNVTAAQSKELATLLTLAERLRVHVSAITPDASALQRFLPFL
CCCCCEEECCCCCCCCCCEEECHHCHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHCC
PSHQQCLAWRDNEQWLWATRYSWGRKLAVGMTSAKELAAALFVDPDSVAICGEGGFDPWE
CCCCHHEEEECCCCEEEEEECCCCCEEEEECCCHHHHHHHEEECCCCEEEECCCCCCHHH
AVSVRQPLLPPPGGDFAIALGLALGKAY
HHCCCCCCCCCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
TGDKEIITMAFKIWQIGLHLQQQEAVAVAIVRGAKECFLQRWWRLPLENDIIKDGRIVD
CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEC
AQQLAKTLLPWSRELPQRHHIMLAFPASRTLQRSFPRPSMSLGEREQTAWLSGTMARELD
HHHHHHHHCCHHHCCCCCCEEEEEECCCHHHHHHCCCCCCCCCCCHHHHHHHCHHHHHCC
MDPDSLRFDYSEDSLSPAYNVTAAQSKELATLLTLAERLRVHVSAITPDASALQRFLPFL
CCCCCEEECCCCCCCCCCEEECHHCHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHCC
PSHQQCLAWRDNEQWLWATRYSWGRKLAVGMTSAKELAAALFVDPDSVAICGEGGFDPWE
CCCCHHEEEECCCCEEEEEECCCCCEEEEECCCHHHHHHHEEECCCCEEEECCCCCCHHH
AVSVRQPLLPPPGGDFAIALGLALGKAY
HHCCCCCCCCCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]