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The map label for this gene is rbsC [H]

Identifier: 82545510

GI number: 82545510

Start: 3131062

End: 3131811

Strand: Direct

Name: rbsC [H]

Synonym: SBO_3127

Alternate gene names: 82545510

Gene position: 3131062-3131811 (Clockwise)

Preceding gene: 82545509

Following gene: 82545511

Centisome position: 69.27

GC content: 40.67

Gene sequence:

>750_bases
ATGACAGAGAAAACTCTTGCCAGTCCGAAACCTTCGGAAATTCCCATTGCAAATAATTTTAAAAAAGTCTTCAGGCAATA
TGGCGGTATCCTCAGTGGAATGGTGGTGTTAATCATTCTGTTCAGTTTTATTAATGACAGTTTTTTTACCGCCAACAACA
TTACTAATATTATTCTTCAGGTTTCGATAATTGCAATTACCGCCTATGGAATGACTTATGTACTTTTGCTTGGCGATATT
GATTTATCGGTCGGTTCAACCATTGCATTGATTGGCACATTTGCTGCGCTTGGGGCTTCATGGGGAATTCCATTTATTTT
ATTGGTCCCATTATCCATTATTGCAGCACTGGCTCTGGGGATGATAAATGGTGGCTTGACGGCTATAGCGGGGATCCCGT
CGTTTATTGTCACCGTTGCTACTATGGGGATCTTCCGTGGTATCGCTTATATAGTGACCGATGGTATGCCCATCATGATT
AAAGATGATGCCTTTCTGGCACTGGGGAATGGAGAATTTCTCTATATACCTATTCCAATCTGGATATTAATCATCTTATT
GCTGATTAACCACTTCATTCTTACTAAAACAACCTTTGGACGAAAAATTTATATCACTGGTGGTAATAAAGAAGCGGCAA
TTTATTCAGGGATAAATGTCACCCGCTTGAAAATTAAAGTCTTTATGATTACAGCCGTGCTGGCAGGTATCAGCGGGATG
ATCCTCGCCTCACGCCTCTATTCCGGGTAA

Upstream 100 bases:

>100_bases
TCGTCTGGTGGTAATGCGTAATAAAACGATTGCCGATATTTATTCATGTGAAAATTTAACGCAGACACAGGTAATGACCG
CTGCAACAGGAGTACGTTAA

Downstream 100 bases:

>100_bases
CCGAATTCCGCGTTGAGCTACGAACTGGATGCTATTGCTGCGGCTGTACTGGGAGGCACCAGCCTGAACGGCGGCTATGG
AACCGTGGTGGGGACGGTGA

Product: ribose ABC transporter permease

Products: ADP; phosphate; arabinose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 248

Protein sequence:

>249_residues
MTEKTLASPKPSEIPIANNFKKVFRQYGGILSGMVVLIILFSFINDSFFTANNITNIILQVSIIAITAYGMTYVLLLGDI
DLSVGSTIALIGTFAALGASWGIPFILLVPLSIIAALALGMINGGLTAIAGIPSFIVTVATMGIFRGIAYIVTDGMPIMI
KDDAFLALGNGEFLYIPIPIWILIILLLINHFILTKTTFGRKIYITGGNKEAAIYSGINVTRLKIKVFMITAVLAGISGM
ILASRLYSG

Sequences:

>Translated_249_residues
MTEKTLASPKPSEIPIANNFKKVFRQYGGILSGMVVLIILFSFINDSFFTANNITNIILQVSIIAITAYGMTYVLLLGDI
DLSVGSTIALIGTFAALGASWGIPFILLVPLSIIAALALGMINGGLTAIAGIPSFIVTVATMGIFRGIAYIVTDGMPIMI
KDDAFLALGNGEFLYIPIPIWILIILLLINHFILTKTTFGRKIYITGGNKEAAIYSGINVTRLKIKVFMITAVLAGISGM
ILASRLYSG
>Mature_248_residues
TEKTLASPKPSEIPIANNFKKVFRQYGGILSGMVVLIILFSFINDSFFTANNITNIILQVSIIAITAYGMTYVLLLGDID
LSVGSTIALIGTFAALGASWGIPFILLVPLSIIAALALGMINGGLTAIAGIPSFIVTVATMGIFRGIAYIVTDGMPIMIK
DDAFLALGNGEFLYIPIPIWILIILLLINHFILTKTTFGRKIYITGGNKEAAIYSGINVTRLKIKVFMITAVLAGISGMI
LASRLYSG

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693152, Length=242, Percent_Identity=37.1900826446281, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1788896, Length=249, Percent_Identity=30.1204819277108, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1790191, Length=233, Percent_Identity=36.9098712446352, Blast_Score=120, Evalue=6e-29,
Organism=Escherichia coli, GI1790524, Length=244, Percent_Identity=34.8360655737705, Blast_Score=111, Evalue=4e-26,
Organism=Escherichia coli, GI87082395, Length=204, Percent_Identity=31.8627450980392, Blast_Score=87, Evalue=8e-19,
Organism=Escherichia coli, GI1787793, Length=212, Percent_Identity=28.7735849056604, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1789992, Length=181, Percent_Identity=31.4917127071823, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI145693214, Length=185, Percent_Identity=33.5135135135135, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1787794, Length=222, Percent_Identity=27.4774774774775, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1788471, Length=253, Percent_Identity=30.0395256916996, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 26614; Mature: 26482

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEKTLASPKPSEIPIANNFKKVFRQYGGILSGMVVLIILFSFINDSFFTANNITNIILQ
CCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHH
VSIIAITAYGMTYVLLLGDIDLSVGSTIALIGTFAALGASWGIPFILLVPLSIIAALALG
HHHHHHHHHHHEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
MINGGLTAIAGIPSFIVTVATMGIFRGIAYIVTDGMPIMIKDDAFLALGNGEFLYIPIPI
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEECCCCEEEECHHH
WILIILLLINHFILTKTTFGRKIYITGGNKEAAIYSGINVTRLKIKVFMITAVLAGISGM
HHHHHHHHHHHHHHHEECCCCEEEEECCCCCEEEECCCEEEEHHHHHHHHHHHHHHHHHH
ILASRLYSG
HHHHHHHCC
>Mature Secondary Structure 
TEKTLASPKPSEIPIANNFKKVFRQYGGILSGMVVLIILFSFINDSFFTANNITNIILQ
CCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHH
VSIIAITAYGMTYVLLLGDIDLSVGSTIALIGTFAALGASWGIPFILLVPLSIIAALALG
HHHHHHHHHHHEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
MINGGLTAIAGIPSFIVTVATMGIFRGIAYIVTDGMPIMIKDDAFLALGNGEFLYIPIPI
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEECCCCEEEECHHH
WILIILLLINHFILTKTTFGRKIYITGGNKEAAIYSGINVTRLKIKVFMITAVLAGISGM
HHHHHHHHHHHHHHHEECCCCEEEEECCCCCEEEECCCEEEEHHHHHHHHHHHHHHHHHH
ILASRLYSG
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; arabinose [Periplasm]; H2O [C]

Specific reaction: ATP + arabinose [Periplasm] + H2O = ADP + phosphate + arabinose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]