Click here to switch to the map view.

The map label for this gene is ygfU [H]

Identifier: 82545489

GI number: 82545489

Start: 3105657

End: 3107174

Strand: Reverse

Name: ygfU [H]

Synonym: SBO_3104

Alternate gene names: 82545489

Gene position: 3107174-3105657 (Counterclockwise)

Preceding gene: 82545490

Following gene: 82545488

Centisome position: 68.75

GC content: 48.75

Gene sequence:

>1518_bases
ATGTGTTTAGACAGTTTCATTAACGTAAACGGTTGCTTTTTACTCTGGCGGGCGAAAGGAGAAACACTGATGAGCGCCAT
AGATTCCCAACTTCTCTCATCTTCTGGGCAAGACCGCCCAACTGATGAGGTTGACCGCATATTATCACCAGGAAAGCTGA
TCATACTCGGTCTGCAACACGTCCTTGTCATGTACGCAGGTGCAGTCGCTGTTCCTCTTATGATTGGTGACCGACTGGGC
CTCTCAAAAGAAGCTATTGCGATGCTCATTAGCTCGGATCTCTTTTGCTGCGGGATCGTCACATTATTGCAATGTATCGG
TATCGGCCGCTTTATGGGGATCCGCCTGCCGGTGATTATGTCGGTGACCTTTGCTGCTGTAACACCAATGATAGCCATTG
GGATGAACCCGGATATTGGCCTGCTGGGGATATTTGGTGCCACTATCGCCGCGGGTTTTATCACCACATTATTAGCGCCA
CTTATCGGTCGCTTGATGCCTTTATTCCCGCCACTGGTTACCGGTGTGGTTATTACTTCTGTCGGACTTAGCATCATTCA
GGTGGGTATTGACTGGGCCGCCGGAGGTAAAGGGAATCCGCAATATGGTAATCCCGTTTATTCAGGTATCTCCTTTGCCG
TCTTAATTTTTATCTTGCTCATTACTCGCTATGCGAAAGGATTTATGTCCAACGTCGCCGTATTACTGGGGATTGTATTT
GGCTTTTTACTTTCGTGGATGATGAATGAAGTCAATTTATCCGGGCTACATGATGCCTTGTGGTTTGCGATTGTCACCCC
GATGTCGTTTGGTATGCCGATTTTCGATCCCGTTTCCATTCTGACCATGACTGCCGTGTTAATCATCGTGTTTATCGAGT
CGATGGGGATGTTCCTGGCACTGGGTGAAATAGTCGGTCGTAAACTCTCTTCACACGATATTATTCGCGGGCTGCGTGTC
GATGGCGTAGGGACAATGATAGGCGGCACGTTTAACAGCTTCCCCCACACGTCATTTTCTCAAAACGTTGGCCTGGTTAG
CGTGACGCGCGTTCATAGCCGCTGGGTGTGTATTTCTTCGGGAATTATATTAATCCTGTTTGGCATGGTGCCAAAAATGG
CGGTGCTGGTAGCCTCCATTCCGCAATTTGTGCTGGGCGGCGCTGGTCTAGTGATGTTCGGCATGGTACTGGCGACAGGG
ATTCGAATTCTGTCGCGCTGTAACTACACCACCAACCGTTACAACCTCTATATTGTGGCGATCAGTCTCGGCGTTGGCAT
GACTCCGACGCTCTCTCACGATTTCTTTTCTAAGTTACCGGCCGTACTGCAACCGCTGCTACATAGCGGCATTATGCTCG
CAACCCTTAGCGCCGTTGTGCTGAACGTCTTCTTTAATGGCTATCAGCATCATGCTGACCTGGTGAAGGAATCCGTCTCT
GATAAAGATTTAAAAGTCAGGACAGTACGTATGTGGCTTCTGATGCGCAAGCTGAAGAAAAATGAGCATGGAGAATAA

Upstream 100 bases:

>100_bases
GTTCTCTTCTCATTTTCGTGGTTTAACCACGATTATGTGATTGCCTCCGCAATTCCTGTCTCTAACTCCCCTTCCTCGCA
AAAACTGGCACTCCACGAGC

Downstream 100 bases:

>100_bases
TATAAATCTTTTAATGCGCGCTATATTCAGTCTGCTGTTGCTTTTTACTCTCTCTATTCCTGTCATTTCTGACTGTGTTG
CAATGGCCATTGAAAGTCGC

Product: permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 505; Mature: 505

Protein sequence:

>505_residues
MCLDSFINVNGCFLLWRAKGETLMSAIDSQLLSSSGQDRPTDEVDRILSPGKLIILGLQHVLVMYAGAVAVPLMIGDRLG
LSKEAIAMLISSDLFCCGIVTLLQCIGIGRFMGIRLPVIMSVTFAAVTPMIAIGMNPDIGLLGIFGATIAAGFITTLLAP
LIGRLMPLFPPLVTGVVITSVGLSIIQVGIDWAAGGKGNPQYGNPVYSGISFAVLIFILLITRYAKGFMSNVAVLLGIVF
GFLLSWMMNEVNLSGLHDALWFAIVTPMSFGMPIFDPVSILTMTAVLIIVFIESMGMFLALGEIVGRKLSSHDIIRGLRV
DGVGTMIGGTFNSFPHTSFSQNVGLVSVTRVHSRWVCISSGIILILFGMVPKMAVLVASIPQFVLGGAGLVMFGMVLATG
IRILSRCNYTTNRYNLYIVAISLGVGMTPTLSHDFFSKLPAVLQPLLHSGIMLATLSAVVLNVFFNGYQHHADLVKESVS
DKDLKVRTVRMWLLMRKLKKNEHGE

Sequences:

>Translated_505_residues
MCLDSFINVNGCFLLWRAKGETLMSAIDSQLLSSSGQDRPTDEVDRILSPGKLIILGLQHVLVMYAGAVAVPLMIGDRLG
LSKEAIAMLISSDLFCCGIVTLLQCIGIGRFMGIRLPVIMSVTFAAVTPMIAIGMNPDIGLLGIFGATIAAGFITTLLAP
LIGRLMPLFPPLVTGVVITSVGLSIIQVGIDWAAGGKGNPQYGNPVYSGISFAVLIFILLITRYAKGFMSNVAVLLGIVF
GFLLSWMMNEVNLSGLHDALWFAIVTPMSFGMPIFDPVSILTMTAVLIIVFIESMGMFLALGEIVGRKLSSHDIIRGLRV
DGVGTMIGGTFNSFPHTSFSQNVGLVSVTRVHSRWVCISSGIILILFGMVPKMAVLVASIPQFVLGGAGLVMFGMVLATG
IRILSRCNYTTNRYNLYIVAISLGVGMTPTLSHDFFSKLPAVLQPLLHSGIMLATLSAVVLNVFFNGYQHHADLVKESVS
DKDLKVRTVRMWLLMRKLKKNEHGE
>Mature_505_residues
MCLDSFINVNGCFLLWRAKGETLMSAIDSQLLSSSGQDRPTDEVDRILSPGKLIILGLQHVLVMYAGAVAVPLMIGDRLG
LSKEAIAMLISSDLFCCGIVTLLQCIGIGRFMGIRLPVIMSVTFAAVTPMIAIGMNPDIGLLGIFGATIAAGFITTLLAP
LIGRLMPLFPPLVTGVVITSVGLSIIQVGIDWAAGGKGNPQYGNPVYSGISFAVLIFILLITRYAKGFMSNVAVLLGIVF
GFLLSWMMNEVNLSGLHDALWFAIVTPMSFGMPIFDPVSILTMTAVLIIVFIESMGMFLALGEIVGRKLSSHDIIRGLRV
DGVGTMIGGTFNSFPHTSFSQNVGLVSVTRVHSRWVCISSGIILILFGMVPKMAVLVASIPQFVLGGAGLVMFGMVLATG
IRILSRCNYTTNRYNLYIVAISLGVGMTPTLSHDFFSKLPAVLQPLLHSGIMLATLSAVVLNVFFNGYQHHADLVKESVS
DKDLKVRTVRMWLLMRKLKKNEHGE

Specific function: Unknown

COG id: COG2233

COG function: function code F; Xanthine/uracil permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xanthine/uracil permease family. Nucleobase:cation symporter-2 (NCS2) (TC 2.A.40) subfamily [H]

Homologues:

Organism=Homo sapiens, GI44680148, Length=444, Percent_Identity=24.7747747747748, Blast_Score=110, Evalue=3e-24,
Organism=Homo sapiens, GI40316845, Length=444, Percent_Identity=24.7747747747748, Blast_Score=110, Evalue=3e-24,
Organism=Homo sapiens, GI44680145, Length=437, Percent_Identity=25.1716247139588, Blast_Score=105, Evalue=7e-23,
Organism=Homo sapiens, GI44680143, Length=441, Percent_Identity=24.9433106575964, Blast_Score=103, Evalue=3e-22,
Organism=Escherichia coli, GI87082181, Length=482, Percent_Identity=99.1701244813278, Blast_Score=947, Evalue=0.0,
Organism=Escherichia coli, GI1790087, Length=462, Percent_Identity=28.1385281385281, Blast_Score=157, Evalue=2e-39,
Organism=Escherichia coli, GI87082178, Length=465, Percent_Identity=26.0215053763441, Blast_Score=130, Evalue=3e-31,
Organism=Escherichia coli, GI1788843, Length=391, Percent_Identity=27.3657289002558, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI87081818, Length=454, Percent_Identity=25.9911894273128, Blast_Score=120, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI17558856, Length=501, Percent_Identity=22.3552894211577, Blast_Score=83, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17541904, Length=465, Percent_Identity=21.2903225806452, Blast_Score=82, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI17542262, Length=451, Percent_Identity=23.7250554323725, Blast_Score=75, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17542260, Length=238, Percent_Identity=27.3109243697479, Blast_Score=74, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71993493, Length=238, Percent_Identity=26.890756302521, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI21356175, Length=425, Percent_Identity=24.7058823529412, Blast_Score=99, Evalue=6e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017588
- InterPro:   IPR006042
- InterPro:   IPR006043 [H]

Pfam domain/function: PF00860 Xan_ur_permease [H]

EC number: NA

Molecular weight: Translated: 54374; Mature: 54374

Theoretical pI: Translated: 9.03; Mature: 9.03

Prosite motif: PS01116 XANTH_URACIL_PERMASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCLDSFINVNGCFLLWRAKGETLMSAIDSQLLSSSGQDRPTDEVDRILSPGKLIILGLQH
CCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCEEEHHHHH
VLVMYAGAVAVPLMIGDRLGLSKEAIAMLISSDLFCCGIVTLLQCIGIGRFMGIRLPVIM
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHH
SVTFAAVTPMIAIGMNPDIGLLGIFGATIAAGFITTLLAPLIGRLMPLFPPLVTGVVITS
HHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGLSIIQVGIDWAAGGKGNPQYGNPVYSGISFAVLIFILLITRYAKGFMSNVAVLLGIVF
HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GFLLSWMMNEVNLSGLHDALWFAIVTPMSFGMPIFDPVSILTMTAVLIIVFIESMGMFLA
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LGEIVGRKLSSHDIIRGLRVDGVGTMIGGTFNSFPHTSFSQNVGLVSVTRVHSRWVCISS
HHHHHCCCCCHHHHHHCCEECCCHHHHCCCCCCCCCCCCCCCCCEEEEEHHHHCEEEHHC
GIILILFGMVPKMAVLVASIPQFVLGGAGLVMFGMVLATGIRILSRCNYTTNRYNLYIVA
CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE
ISLGVGMTPTLSHDFFSKLPAVLQPLLHSGIMLATLSAVVLNVFFNGYQHHADLVKESVS
EEECCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DKDLKVRTVRMWLLMRKLKKNEHGE
CCCHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MCLDSFINVNGCFLLWRAKGETLMSAIDSQLLSSSGQDRPTDEVDRILSPGKLIILGLQH
CCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCEEEHHHHH
VLVMYAGAVAVPLMIGDRLGLSKEAIAMLISSDLFCCGIVTLLQCIGIGRFMGIRLPVIM
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHH
SVTFAAVTPMIAIGMNPDIGLLGIFGATIAAGFITTLLAPLIGRLMPLFPPLVTGVVITS
HHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGLSIIQVGIDWAAGGKGNPQYGNPVYSGISFAVLIFILLITRYAKGFMSNVAVLLGIVF
HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GFLLSWMMNEVNLSGLHDALWFAIVTPMSFGMPIFDPVSILTMTAVLIIVFIESMGMFLA
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LGEIVGRKLSSHDIIRGLRVDGVGTMIGGTFNSFPHTSFSQNVGLVSVTRVHSRWVCISS
HHHHHCCCCCHHHHHHCCEECCCHHHHCCCCCCCCCCCCCCCCCEEEEEHHHHCEEEHHC
GIILILFGMVPKMAVLVASIPQFVLGGAGLVMFGMVLATGIRILSRCNYTTNRYNLYIVA
CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE
ISLGVGMTPTLSHDFFSKLPAVLQPLLHSGIMLATLSAVVLNVFFNGYQHHADLVKESVS
EEECCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DKDLKVRTVRMWLLMRKLKKNEHGE
CCCHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]