| Definition | Shigella boydii Sb227, complete genome. |
|---|---|
| Accession | NC_007613 |
| Length | 4,519,823 |
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The map label for this gene is ygjJ [H]
Identifier: 82545336
GI number: 82545336
Start: 2945349
End: 2946098
Strand: Direct
Name: ygjJ [H]
Synonym: SBO_2940
Alternate gene names: 82545336
Gene position: 2945349-2946098 (Clockwise)
Preceding gene: 82545335
Following gene: 82545337
Centisome position: 65.17
GC content: 52.8
Gene sequence:
>750_bases GTGCCAGACCATAGCTGGGGTGGTTTCGAGGGCGGAATTAACCGTTTCTATGGCGGTTATCGTACCAATGATGGCACCGA AATCATGCTCAGTCTGCGTCAGGATTCCTCGCTGGATGACCTGCAATGGTGGGGCGATTTCACCCCCGATCTGGGCTACG TCATTCCCAATACCCGCGACATTATGACTGCGCTGAAGGTACAGAACTTAAGCGGCAACTTTCGTTATAGCGTCACCGCG ACTCCTGCCGGACATCATGATGAAAGCAAAGCCTGGCTACATTTTGGCAAATACGATCGCTATGACGACAAATACACCTA TCCGGCAATGATGAACGGTTACATCCAGTATGACCTTGCCGAAGGCATCACCTGGATGAACGGTCTGGAAATCACCGACG GCACAGGACAGCTCTATCTCACGGGCCTGCTAACTCCTAACTTTGCCGCTCGCGCCTGGCACCATACCGGACGCGCCGAC GGGCTGGACGTACCGGGAAGTGAAAGTGGGATGATGGTGAGCGCCATGTATGAAGCGTTAAAGGGCGTTTATCTCTCCAC CGCTTACACCTACGCCAAACATCGCCCTGACCACGCTGACGATGAAACCACCTCTTTCATGCAGTTTGGTATCTGGTACG AATACGGCGGCGGACGTTTCGCCACGGCTTTTGATAGCCGCTTCTACATGAAAAATGCCTCTCACGATCCCAGCGACCAA ATCTTCCTGATGCAATATTTCTACTGGTAA
Upstream 100 bases:
>100_bases GAAGTCACTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGT AAGTTGGAGTCATTACCTGG
Downstream 100 bases:
>100_bases TAAGGACTGTAATTTCATGAAAATAAAAACTATTTTAACGCCAGTAACCTGCGCTCTGCTGATAAGTTTTTCCGCCCATG CCGCTAACGCCGACAATTAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 249; Mature: 248
Protein sequence:
>249_residues MPDHSWGGFEGGINRFYGGYRTNDGTEIMLSLRQDSSLDDLQWWGDFTPDLGYVIPNTRDIMTALKVQNLSGNFRYSVTA TPAGHHDESKAWLHFGKYDRYDDKYTYPAMMNGYIQYDLAEGITWMNGLEITDGTGQLYLTGLLTPNFAARAWHHTGRAD GLDVPGSESGMMVSAMYEALKGVYLSTAYTYAKHRPDHADDETTSFMQFGIWYEYGGGRFATAFDSRFYMKNASHDPSDQ IFLMQYFYW
Sequences:
>Translated_249_residues MPDHSWGGFEGGINRFYGGYRTNDGTEIMLSLRQDSSLDDLQWWGDFTPDLGYVIPNTRDIMTALKVQNLSGNFRYSVTA TPAGHHDESKAWLHFGKYDRYDDKYTYPAMMNGYIQYDLAEGITWMNGLEITDGTGQLYLTGLLTPNFAARAWHHTGRAD GLDVPGSESGMMVSAMYEALKGVYLSTAYTYAKHRPDHADDETTSFMQFGIWYEYGGGRFATAFDSRFYMKNASHDPSDQ IFLMQYFYW >Mature_248_residues PDHSWGGFEGGINRFYGGYRTNDGTEIMLSLRQDSSLDDLQWWGDFTPDLGYVIPNTRDIMTALKVQNLSGNFRYSVTAT PAGHHDESKAWLHFGKYDRYDDKYTYPAMMNGYIQYDLAEGITWMNGLEITDGTGQLYLTGLLTPNFAARAWHHTGRADG LDVPGSESGMMVSAMYEALKGVYLSTAYTYAKHRPDHADDETTSFMQFGIWYEYGGGRFATAFDSRFYMKNASHDPSDQI FLMQYFYW
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1789461, Length=249, Percent_Identity=99.5983935742972, Blast_Score=515, Evalue=1e-148,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28426; Mature: 28295
Theoretical pI: Translated: 4.78; Mature: 4.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.8 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDHSWGGFEGGINRFYGGYRTNDGTEIMLSLRQDSSLDDLQWWGDFTPDLGYVIPNTRD CCCCCCCCCCCCHHHHCCCEECCCCCEEEEEECCCCCCCHHHHCCCCCCCCCEECCCHHH IMTALKVQNLSGNFRYSVTATPAGHHDESKAWLHFGKYDRYDDKYTYPAMMNGYIQYDLA HHHHHHHCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCCEECHHHHCCEEEEEHH EGITWMNGLEITDGTGQLYLTGLLTPNFAARAWHHTGRADGLDVPGSESGMMVSAMYEAL HCCEECCCEEEECCCCEEEEEEECCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH KGVYLSTAYTYAKHRPDHADDETTSFMQFGIWYEYGGGRFATAFDSRFYMKNASHDPSDQ HHHHHHHHHHHHHCCCCCCCCHHHHHEEECEEEEECCCEEEEEECCEEEECCCCCCCCCC IFLMQYFYW EEEEEEECC >Mature Secondary Structure PDHSWGGFEGGINRFYGGYRTNDGTEIMLSLRQDSSLDDLQWWGDFTPDLGYVIPNTRD CCCCCCCCCCCHHHHCCCEECCCCCEEEEEECCCCCCCHHHHCCCCCCCCCEECCCHHH IMTALKVQNLSGNFRYSVTATPAGHHDESKAWLHFGKYDRYDDKYTYPAMMNGYIQYDLA HHHHHHHCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCCEECHHHHCCEEEEEHH EGITWMNGLEITDGTGQLYLTGLLTPNFAARAWHHTGRADGLDVPGSESGMMVSAMYEAL HCCEECCCEEEECCCCEEEEEEECCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH KGVYLSTAYTYAKHRPDHADDETTSFMQFGIWYEYGGGRFATAFDSRFYMKNASHDPSDQ HHHHHHHHHHHHHCCCCCCCCHHHHHEEECEEEEECCCEEEEEECCEEEECCCCCCCCCC IFLMQYFYW EEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]