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The map label for this gene is ygiD [H]

Identifier: 82545296

GI number: 82545296

Start: 2899600

End: 2900415

Strand: Reverse

Name: ygiD [H]

Synonym: SBO_2897

Alternate gene names: 82545296

Gene position: 2900415-2899600 (Counterclockwise)

Preceding gene: 82545298

Following gene: 82545291

Centisome position: 64.17

GC content: 53.68

Gene sequence:

>816_bases
ATGACACCCTTAGTTAAGGATATCATCATGTCTTCAACACGTATGCCAGCATTGTTTTTAGGTCACGGTAGTCCGATGAA
CGTGCTGGAAGATAATTTGTATACCCGCAGCTGGCAGAAGTTGGGGATGACATTGCCACGCCCGCAAGCGATTGTGGTGG
TTTCGGCTCACTGGTTTACCCGTGGAACAGGAGTGACCGCGATGGAGACGCCGCCCACGATTCATGACTTTGGTGGCTTC
CCGCAGGCGCTGTACGATACGCATTATCCTGCTCCGGGTTCGCCTGTGCTGGCACAGCATCTGGTTGAGCTGTTAGCGCC
GGTCCCGGTGACGCTGGATAAAGAAGCCAGGGGCTTTGACCACGGTTCCTGGGGCGTGCTGATTAAGATGTATCCTGACG
CCGATATCCCGATGGTGCAGTTGAGTATCGACAGTAGCAAACCTGCCGCCTGGCATTTCGAAATGGGGCGCAAACTGGCA
GCGCTGCGAGATGAAGGAATAATGTTGGTCGCCAGTGGCAACGTGGTGCATAACCTGCGTACAGTGAAGTGGCACGGTGA
TAGTTCACCATATCCTTGGGCGATGTCGTTTAATGAGTATGTGAAAGCGAATCTGACGTGGCAAGGGGCGGTAGAGCAGC
ATCCTCTGGTGAATTACCTCGACCATGAAGGTGGCGCGTTATCGAACCCAACGCCGGAGCACTATCTGCCGTTGTTGTAT
GTCTTAGGTGCGTGGGATGGGCAGGAGCCAATTACCATTCCGGTCGATGGTATAGAAATGGGCAGCCTGAGTATGCTGTC
GGTGCAGATAGGTTAA

Upstream 100 bases:

>100_bases
AATCTTCACCTTCAGGCAGATCGTCAAAATAACTGATGATCATCATCATTGTTATCCGGGTTCTTACTCCGCCGAACAAG
CGTATTGTGAGGATATCAAA

Downstream 100 bases:

>100_bases
CAATTACCGGATGGCGAATGCCATCCGGCATCATTGATTACTCAACAAAAATATGTGGATAAAACCGAGACATATCCTGG
GTGATCAATGCACGGTCTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 270

Protein sequence:

>271_residues
MTPLVKDIIMSSTRMPALFLGHGSPMNVLEDNLYTRSWQKLGMTLPRPQAIVVVSAHWFTRGTGVTAMETPPTIHDFGGF
PQALYDTHYPAPGSPVLAQHLVELLAPVPVTLDKEARGFDHGSWGVLIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLA
ALRDEGIMLVASGNVVHNLRTVKWHGDSSPYPWAMSFNEYVKANLTWQGAVEQHPLVNYLDHEGGALSNPTPEHYLPLLY
VLGAWDGQEPITIPVDGIEMGSLSMLSVQIG

Sequences:

>Translated_271_residues
MTPLVKDIIMSSTRMPALFLGHGSPMNVLEDNLYTRSWQKLGMTLPRPQAIVVVSAHWFTRGTGVTAMETPPTIHDFGGF
PQALYDTHYPAPGSPVLAQHLVELLAPVPVTLDKEARGFDHGSWGVLIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLA
ALRDEGIMLVASGNVVHNLRTVKWHGDSSPYPWAMSFNEYVKANLTWQGAVEQHPLVNYLDHEGGALSNPTPEHYLPLLY
VLGAWDGQEPITIPVDGIEMGSLSMLSVQIG
>Mature_270_residues
TPLVKDIIMSSTRMPALFLGHGSPMNVLEDNLYTRSWQKLGMTLPRPQAIVVVSAHWFTRGTGVTAMETPPTIHDFGGFP
QALYDTHYPAPGSPVLAQHLVELLAPVPVTLDKEARGFDHGSWGVLIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLAA
LRDEGIMLVASGNVVHNLRTVKWHGDSSPYPWAMSFNEYVKANLTWQGAVEQHPLVNYLDHEGGALSNPTPEHYLPLLYV
LGAWDGQEPITIPVDGIEMGSLSMLSVQIG

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=262, Percent_Identity=96.9465648854962, Blast_Score=520, Evalue=1e-149,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 29829; Mature: 29697

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPLVKDIIMSSTRMPALFLGHGSPMNVLEDNLYTRSWQKLGMTLPRPQAIVVVSAHWFT
CCHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEE
RGTGVTAMETPPTIHDFGGFPQALYDTHYPAPGSPVLAQHLVELLAPVPVTLDKEARGFD
CCCCCEEECCCCCHHHCCCCCHHHHCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCC
HGSWGVLIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALRDEGIMLVASGNVVHNLR
CCCCEEEEEECCCCCCCEEEEEECCCCCCEEEHHHCCCEEEECCCCEEEEECCCEEEEEE
TVKWHGDSSPYPWAMSFNEYVKANLTWQGAVEQHPLVNYLDHEGGALSNPTPEHYLPLLY
EEEECCCCCCCCEEECCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCCCCCCHHHHEEEE
VLGAWDGQEPITIPVDGIEMGSLSMLSVQIG
EEECCCCCCCEEEEECCCCCCCEEEEEEEEC
>Mature Secondary Structure 
TPLVKDIIMSSTRMPALFLGHGSPMNVLEDNLYTRSWQKLGMTLPRPQAIVVVSAHWFT
CHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEE
RGTGVTAMETPPTIHDFGGFPQALYDTHYPAPGSPVLAQHLVELLAPVPVTLDKEARGFD
CCCCCEEECCCCCHHHCCCCCHHHHCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCC
HGSWGVLIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALRDEGIMLVASGNVVHNLR
CCCCEEEEEECCCCCCCEEEEEECCCCCCEEEHHHCCCEEEECCCCEEEEECCCEEEEEE
TVKWHGDSSPYPWAMSFNEYVKANLTWQGAVEQHPLVNYLDHEGGALSNPTPEHYLPLLY
EEEECCCCCCCCEEECCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCCCCCCHHHHEEEE
VLGAWDGQEPITIPVDGIEMGSLSMLSVQIG
EEECCCCCCCEEEEECCCCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]