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The map label for this gene is yfiN [H]

Identifier: 82545148

GI number: 82545148

Start: 2752179

End: 2752490

Strand: Direct

Name: yfiN [H]

Synonym: SBO_2740

Alternate gene names: 82545148

Gene position: 2752179-2752490 (Clockwise)

Preceding gene: 82545147

Following gene: 82545149

Centisome position: 60.89

GC content: 46.47

Gene sequence:

>312_bases
TTGATTGAAATCGCAAAACGGTTAGCTGAATTTGGCGGGCTGCGACATAAAGCATACCGCCTGGGCGGCGATGAATTCGC
TATGGTGCTCTATGATGTACAGTCGGAATCTGAAGTGCAACAGATATGCTCAGCACTGACACAAATCTTTAATCTCCCGT
TTGATCTTCATAATGGCCATCAGACCACCATGACATTAAGCATTGGTTACGCGATGACCATTGAGCACGCCTCTGCGGAA
AAATTACAAGAGCTTGCCGATCACAATATGTATCAGGCCAAACACCAGCGTGCCGAAAAGCTGGTGAGATAA

Upstream 100 bases:

>100_bases
CAATTCCGATGCCCGAAAAACGTCGGCGTTACTATTTCTTGATGGCGATAATTTCAAATATATCAATGATACCTGGGGTC
ATGCGACGGGCGATAGGGTC

Downstream 100 bases:

>100_bases
CAAGGATATATCGATATGATAAAGCACCTGGTAGCCCCCCTGATTTTCACCTCACTAATACTGACTGGCTGCCAGTCCCC
TCAGGGAAAGTTTACTCCTG

Product: hypothetical protein

Products: NA

Alternate protein names: DGC [H]

Number of amino acids: Translated: 103; Mature: 103

Protein sequence:

>103_residues
MIEIAKRLAEFGGLRHKAYRLGGDEFAMVLYDVQSESEVQQICSALTQIFNLPFDLHNGHQTTMTLSIGYAMTIEHASAE
KLQELADHNMYQAKHQRAEKLVR

Sequences:

>Translated_103_residues
MIEIAKRLAEFGGLRHKAYRLGGDEFAMVLYDVQSESEVQQICSALTQIFNLPFDLHNGHQTTMTLSIGYAMTIEHASAE
KLQELADHNMYQAKHQRAEKLVR
>Mature_103_residues
MIEIAKRLAEFGGLRHKAYRLGGDEFAMVLYDVQSESEVQQICSALTQIFNLPFDLHNGHQTTMTLSIGYAMTIEHASAE
KLQELADHNMYQAKHQRAEKLVR

Specific function: Cyclic-di-GMP is a second messenger which controls cell surface-associated traits in bacteria [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HAMP domain [H]

Homologues:

Organism=Escherichia coli, GI1788956, Length=103, Percent_Identity=99.0291262135922, Blast_Score=216, Evalue=2e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR003660 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: =2.7.7.65 [H]

Molecular weight: Translated: 11736; Mature: 11736

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEIAKRLAEFGGLRHKAYRLGGDEFAMVLYDVQSESEVQQICSALTQIFNLPFDLHNGH
CHHHHHHHHHHCCCHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCC
QTTMTLSIGYAMTIEHASAEKLQELADHNMYQAKHQRAEKLVR
CEEEEEEECEEEEECCCCHHHHHHHHHCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIEIAKRLAEFGGLRHKAYRLGGDEFAMVLYDVQSESEVQQICSALTQIFNLPFDLHNGH
CHHHHHHHHHHCCCHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCC
QTTMTLSIGYAMTIEHASAEKLQELADHNMYQAKHQRAEKLVR
CEEEEEEECEEEEECCCCHHHHHHHHHCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 6357787; 7567469 [H]