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The map label for this gene is ygcF [H]

Identifier: 82545074

GI number: 82545074

Start: 2660021

End: 2660692

Strand: Reverse

Name: ygcF [H]

Synonym: SBO_2656

Alternate gene names: 82545074

Gene position: 2660692-2660021 (Counterclockwise)

Preceding gene: 82545076

Following gene: 82545072

Centisome position: 58.87

GC content: 51.79

Gene sequence:

>672_bases
ATGCAGTACCCGATTAACGAGATGTTCCAGACCCTGCAAGGTGAGGGTTACTTTACCGGCGTCCCCGCCATTTTTATTCG
TTTACAGGGATGCCCGGTTGGCTGTGCCTGGTGCGACACCAAACACACCTGGGAAAAGCTTGAGGATCGGGAAGTCTCCC
TTTTCAGCATTCTGGCGAAGACCAAAGAGAGTGATAAGTGGGGGGCGGCGAGCAGTGAAGATTTGCTGGCTGTCATTGGT
CGGCAGGGATATACCGCGCGGCATGTGGTGATTACGGGTGGTGAGCCTTGCATTCATGATTTGCTGCCACTGACTGACCT
GCTCGAAAAGAACGGTTTTAGCTGCCAGATCGAAACCAGTGGAACTCATGAAGTACGCTGCACACCGAATACCTGGGTTA
CCGTATCGCCAAAGCTGAACATGCGCGGCGGCTATGACGTGTTGTCACAGGCACTGGAGCGAGCCAACGAAATCAAGCAT
CCAGTGGGGCGCGTACGCGATATTGAAGCACTCGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGC
ACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGA
TGCAAACACATAAATATCTAAATATTGCCTGA

Upstream 100 bases:

>100_bases
CATTTTTCTTTAAATCTGCATGTAACAGAATGTTAATAAGGCATGATTGTTGCGGCAGGATCTGCAATAATTAACAATTA
TCCACTTCACAGAGAATGCT

Downstream 100 bases:

>100_bases
TTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAAC
TCCTCCATTTTACCCATCCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIG
RQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYDVLSQALERANEIKH
PVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA

Sequences:

>Translated_223_residues
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIG
RQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYDVLSQALERANEIKH
PVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>Mature_223_residues
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIG
RQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYDVLSQALERANEIKH
PVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=223, Percent_Identity=99.5515695067265, Blast_Score=465, Evalue=1e-132,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 25016; Mature: 25016

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAK
CCCCHHHHHHHHCCCCEEECCCEEEEEECCCCCEEEECCCHHHHHHHCCCCHHHHHHHHH
TKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETS
CCCCCCCCCCCCCCHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECC
GTHEVRCTPNTWVTVSPKLNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLTD
CCEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
CCCCEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCEEEECC
>Mature Secondary Structure
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAK
CCCCHHHHHHHHCCCCEEECCCEEEEEECCCCCEEEECCCHHHHHHHCCCCHHHHHHHHH
TKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETS
CCCCCCCCCCCCCCHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECC
GTHEVRCTPNTWVTVSPKLNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLTD
CCEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
CCCCEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]