| Definition | Shigella boydii Sb227, complete genome. |
|---|---|
| Accession | NC_007613 |
| Length | 4,519,823 |
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The map label for this gene is 82545062
Identifier: 82545062
GI number: 82545062
Start: 2647626
End: 2647859
Strand: Direct
Name: 82545062
Synonym: SBO_2644
Alternate gene names: NA
Gene position: 2647626-2647859 (Clockwise)
Preceding gene: 82545060
Following gene: 82545067
Centisome position: 58.58
GC content: 47.86
Gene sequence:
>234_bases TTGCCATGTTTTACGGCAATGAGAGCAGAGATAGCGCTGATGTCCGGCAGTGCTTTTGCCGTTACGCACCACGCCTTCAG TAGCGGAGCAGGAAGGACATCTGATGGAAATGGAAGCCACGCAAGCACCTTAAAATCACCATCATACACTAAATCAGTAA GTTGGCAGCATTATCGATTGCCACAAGGGCATATTTTGTCAGCATGTCTTGCCTCCCTGCAAAGAAGAGACTAA
Upstream 100 bases:
>100_bases CCATAATGCGTGCACTGGCGCGACATCCGACGCCATTCATGGCCATATCAATGATTTTCTGGTGCGTACCGGGCTGAGAG GCGGTGTAAGTGAACTGTAG
Downstream 100 bases:
>100_bases CATTCGAATTGTTTGGGTTCGAACGCTGGCCTCAGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCG CGAATGCTTAACGCCAGACA
Product: IS1 encoded protein
Products: NA
Alternate protein names: Transposase; Glycosy Hydrolase Family; Outer Membrane Fimbrial User Protein; Allantoinase; Ankyrin-Repeat Protein A; Efflux Pump Component MtrF; Minor Fimbrial Subunit
Number of amino acids: Translated: 77; Mature: 76
Protein sequence:
>77_residues MPCFTAMRAEIALMSGSAFAVTHHAFSSGAGRTSDGNGSHASTLKSPSYTKSVSWQHYRLPQGHILSACLASLQRRD
Sequences:
>Translated_77_residues MPCFTAMRAEIALMSGSAFAVTHHAFSSGAGRTSDGNGSHASTLKSPSYTKSVSWQHYRLPQGHILSACLASLQRRD >Mature_76_residues PCFTAMRAEIALMSGSAFAVTHHAFSSGAGRTSDGNGSHASTLKSPSYTKSVSWQHYRLPQGHILSACLASLQRRD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 8238; Mature: 8107
Theoretical pI: Translated: 9.96; Mature: 9.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 6.5 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPCFTAMRAEIALMSGSAFAVTHHAFSSGAGRTSDGNGSHASTLKSPSYTKSVSWQHYRL CCCCHHHHHEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC PQGHILSACLASLQRRD CCCHHHHHHHHHHHCCC >Mature Secondary Structure PCFTAMRAEIALMSGSAFAVTHHAFSSGAGRTSDGNGSHASTLKSPSYTKSVSWQHYRL CCCHHHHHEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC PQGHILSACLASLQRRD CCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA