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The map label for this gene is yphF [H]

Identifier: 82544998

GI number: 82544998

Start: 2574869

End: 2575714

Strand: Reverse

Name: yphF [H]

Synonym: SBO_2574

Alternate gene names: 82544998

Gene position: 2575714-2574869 (Counterclockwise)

Preceding gene: 82544999

Following gene: 82544997

Centisome position: 56.99

GC content: 46.45

Gene sequence:

>846_bases
GTGCGTCAGGGCGTTCAGGATGCGGCAAAAGATTCTTCAGTACAGGTACAGTTAATTGAAACTAACGCCCAGGGTGATAT
TTCGAAAGAAAGTACCTTTGTTGATACCCTCGTGGCGCGTAATGTCGATGCCATTATTTTATCGGCAGTGTCTGAAAATG
GCAGTAGCCGTACCGTTCGTCGCGCCAGTGAAGCGGGTATTCCGGTGATTTGCTACAACACCTGTATTAATCAAAAGGGT
GTCGATAAATATGTCTCGGCGTATCTGGTCGGCGATCCACTGGAATTTGGTAAAAAACTGAGTAACGCTGCCGCCGATTA
TTTTATTGCCAATAAAATTGACCAGCCGAAAATTGCCGTCATCAATTGCGAAGCCTTTGAAGTTTGTGTGCAGCGACGTA
AAGGATTTGAAGAAGTATTAAAATCCCGCGTTCCCGGCGCGCAAATTGTCGCTAATCAGGAAGGGACTGTTTTAGATAAA
GCGATTTCCGTTGGTGAAAAACTGATTATCTCCACGCCGGATCTCAACGCCATTATGGGGGAGTCGGGCGGTGCGACACT
CGGCGCGGTAAAAGCGGTACGTAATCAAAATCAGGCCGGAAAAATTGCTGTTTTCGGTTCGGATATGACAACCGAAATTG
CTCAGGAGCTGGAAAACAATCAGGTGCTGAAAGCGGTAGTGGATATTTCCGGTAAGAAAATGGGCAATGCTGTTTTCGCG
CAAACATTGAAGGTTATCAATAAACAAGCCGACGGTGAAAAAGTGATTCAGGTGCCAATCGATCTCTATACCAAAACGGA
AGATGGTAAACAGTGGCTGGCAACGCACGTTGATGGTCTGCCCTAA

Upstream 100 bases:

>100_bases
AATGGCTACGCTATTAGGTAGCGCACTATTTGCCAGGGCTGCGGATAAAGAAATGACCATTGGTGCAATATACCTTGATA
CCTAGGGATATTACGCTGGA

Downstream 100 bases:

>100_bases
TCGCTGATTCGCAGAGGTCCCTATGTTCACGGCAACAGAGGCAGTCCCGGTAGCAAAAGTGGTGGCAGGAAATAAGCGTT
ACCCCGGCGTCGTTGCGCTG

Product: LACI-type transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKG
VDKYVSAYLVGDPLEFGKKLSNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDK
AISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFA
QTLKVINKQADGEKVIQVPIDLYTKTEDGKQWLATHVDGLP

Sequences:

>Translated_281_residues
MRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKG
VDKYVSAYLVGDPLEFGKKLSNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDK
AISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFA
QTLKVINKQADGEKVIQVPIDLYTKTEDGKQWLATHVDGLP
>Mature_281_residues
MRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKG
VDKYVSAYLVGDPLEFGKKLSNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDK
AISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFA
QTLKVINKQADGEKVIQVPIDLYTKTEDGKQWLATHVDGLP

Specific function: Probably part of the binding-protein-dependent transport system yphDEF [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1788898, Length=281, Percent_Identity=99.288256227758, Blast_Score=566, Evalue=1e-163,

Paralogues:

None

Copy number: 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 30084; Mature: 30084

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVR
CCCCHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCHHHEEHHHHHCCCCCHHHH
RASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLSNAAADYFIANKIDQPKIAV
HHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEE
INCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMG
EECHHHHHHHHHHCCHHHHHHHCCCCCEEEECCCCCHHHHHHHCCCEEEEECCCCHHEEC
ESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFA
CCCCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHH
QTLKVINKQADGEKVIQVPIDLYTKTEDGKQWLATHVDGLP
HHHHHHHCCCCCCEEEEEEEEEEECCCCHHHHHHHHCCCCC
>Mature Secondary Structure
MRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVR
CCCCHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCHHHEEHHHHHCCCCCHHHH
RASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLSNAAADYFIANKIDQPKIAV
HHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEE
INCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMG
EECHHHHHHHHHHCCHHHHHHHCCCCCEEEECCCCCHHHHHHHCCCEEEEECCCCHHEEC
ESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFA
CCCCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHH
QTLKVINKQADGEKVIQVPIDLYTKTEDGKQWLATHVDGLP
HHHHHHHCCCCCCEEEEEEEEEEECCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 9298646 [H]