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The map label for this gene is nifU [H]

Identifier: 82544978

GI number: 82544978

Start: 2555293

End: 2555679

Strand: Reverse

Name: nifU [H]

Synonym: SBO_2553

Alternate gene names: 82544978

Gene position: 2555679-2555293 (Counterclockwise)

Preceding gene: 82544979

Following gene: 82544977

Centisome position: 56.54

GC content: 49.61

Gene sequence:

>387_bases
ATGGCTTACAGCGAAAAAGTTATCGACCATTACGAGAATCCGCGTAACGTGGGTTCCTTTGACAACAACGACGAGAACGT
CGGCAGCGGCATGGTGGGTGCACCGGCCTGTGGCGACGTGATGAAGTTGCAGATTAAAGTCAACGATGAAGGTATCATTG
AAGACGCGCGTTTTAAAACTTACGGCTGCGGTTCTGCTATCGCTTCCAGCTCCCTGGTCACCGAATGGGTGAAAGGGAAG
TCTCTCGTCGAAGCGCAGGCGATCAAAAACACCGATATTGCTGAAGAACTTGAACTGCCGCCGGTGAAAATTCACTGTTC
TATTCTGGCAGAAGACGCGATCAAAGCCGCCATTGCGGACTATAAAAGCAAACGTGAAGCAAAATAA

Upstream 100 bases:

>100_bases
TGACCTTTCTCCGCTGTGGGAAATGTACAAGCAGGGCGTGGATCTGAACAGCATCGAATGGGCTCATCATTAATCGGTAT
CGGAATCAGGAGAATTTATA

Downstream 100 bases:

>100_bases
GAGTTGAGGTTTGGTTATGTCGATTACACTGAGCGACAGTGCAGCAGCGCGAGTAAATACCTTTCTGGCTAACCGCGGCA
AAGGGTTTGGCCTGCGTCTG

Product: scaffold protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 127

Protein sequence:

>128_residues
MAYSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQIKVNDEGIIEDARFKTYGCGSAIASSSLVTEWVKGK
SLVEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSKREAK

Sequences:

>Translated_128_residues
MAYSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQIKVNDEGIIEDARFKTYGCGSAIASSSLVTEWVKGK
SLVEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSKREAK
>Mature_127_residues
AYSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQIKVNDEGIIEDARFKTYGCGSAIASSSLVTEWVKGKS
LVEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSKREAK

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

Organism=Homo sapiens, GI56699456, Length=126, Percent_Identity=75.3968253968254, Blast_Score=205, Evalue=7e-54,
Organism=Homo sapiens, GI24307953, Length=126, Percent_Identity=74.6031746031746, Blast_Score=201, Evalue=9e-53,
Organism=Escherichia coli, GI1788878, Length=128, Percent_Identity=99.21875, Blast_Score=259, Evalue=5e-71,
Organism=Caenorhabditis elegans, GI17543474, Length=126, Percent_Identity=69.0476190476191, Blast_Score=189, Evalue=3e-49,
Organism=Saccharomyces cerevisiae, GI6325122, Length=124, Percent_Identity=71.7741935483871, Blast_Score=189, Evalue=9e-50,
Organism=Saccharomyces cerevisiae, GI6324800, Length=124, Percent_Identity=73.3870967741936, Blast_Score=189, Evalue=1e-49,
Organism=Drosophila melanogaster, GI21355597, Length=126, Percent_Identity=73.8095238095238, Blast_Score=201, Evalue=1e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011339
- InterPro:   IPR002871 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 13833; Mature: 13702

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQIKVNDEGIIEDARFKT
CCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEECCCCCC
YGCGSAIASSSLVTEWVKGKSLVEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIAD
CCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHCCCCEEEEHHHHHHHHHHHHHHH
YKSKREAK
HHHHCCCC
>Mature Secondary Structure 
AYSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQIKVNDEGIIEDARFKT
CCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEECCCCCC
YGCGSAIASSSLVTEWVKGKSLVEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIAD
CCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHCCCCEEEEHHHHHHHHHHHHHHH
YKSKREAK
HHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]