Definition Shigella boydii Sb227, complete genome.
Accession NC_007613
Length 4,519,823

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The map label for this gene is elaB [H]

Identifier: 82544748

GI number: 82544748

Start: 2292892

End: 2293197

Strand: Reverse

Name: elaB [H]

Synonym: SBO_2303

Alternate gene names: 82544748

Gene position: 2293197-2292892 (Counterclockwise)

Preceding gene: 82544749

Following gene: 161984903

Centisome position: 50.74

GC content: 51.31

Gene sequence:

>306_bases
ATGTCTAATCAGTTTGGTGATACACGTATCGATGACGACCTGACGCTGCTTAGTGAGACACTGGAAGAGGTGCTCCGCTC
CTCTGGCGATCCCGCTGATCAGAAATATGTTGAGCTGAAAGCGCGTGCAGAAAAAGCGCTGGATGATGTGAAAAAACGGG
TTAGCCAGGTTTCAGACAGTTATTACTATCGGGCGAAGCAGGCTGTTTATCGTGCTGATGACTACGTCCACGAAAAACCT
TGGCAAGGAATTGGTGTGGGCGCGGCCGTTGGGCTGGTACTAGGACTGTTGCTGGCACGCCGTTAA

Upstream 100 bases:

>100_bases
TGGTATCCCACACATTGGGATGGCACGCGAGGTAATTCAGGCGTAATCAACAACCCTTGTCTATAGTTAGTGACAGGTTT
TACGCAAATGGAGAACGAGA

Downstream 100 bases:

>100_bases
AACCTCCCTACACCGGGGTACTGCATTTTTTTTGTAGTACCCCGTATAATGTGAGGCTTTTAACAGGGAGAGGTCCGCGT
GCAATCACTTACTACGGCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 101; Mature: 100

Protein sequence:

>101_residues
MSNQFGDTRIDDDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQVSDSYYYRAKQAVYRADDYVHEKP
WQGIGVGAAVGLVLGLLLARR

Sequences:

>Translated_101_residues
MSNQFGDTRIDDDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQVSDSYYYRAKQAVYRADDYVHEKP
WQGIGVGAAVGLVLGLLLARR
>Mature_100_residues
SNQFGDTRIDDDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQVSDSYYYRAKQAVYRADDYVHEKPW
QGIGVGAAVGLVLGLLLARR

Specific function: Unknown

COG id: COG4575

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ygaM and yqjD [H]

Homologues:

Organism=Escherichia coli, GI1788601, Length=101, Percent_Identity=99.009900990099, Blast_Score=201, Evalue=1e-53,
Organism=Escherichia coli, GI1789485, Length=101, Percent_Identity=41.5841584158416, Blast_Score=91, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010279 [H]

Pfam domain/function: PF05957 DUF883 [H]

EC number: NA

Molecular weight: Translated: 11334; Mature: 11203

Theoretical pI: Translated: 5.18; Mature: 5.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNQFGDTRIDDDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQVSDS
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YYYRAKQAVYRADDYVHEKPWQGIGVGAAVGLVLGLLLARR
HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SNQFGDTRIDDDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQVSDS
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YYYRAKQAVYRADDYVHEKPWQGIGVGAAVGLVLGLLLARR
HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]