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The map label for this gene is ycbF [H]

Identifier: 82544732

GI number: 82544732

Start: 2275664

End: 2276401

Strand: Reverse

Name: ycbF [H]

Synonym: SBO_2287

Alternate gene names: 82544732

Gene position: 2276401-2275664 (Counterclockwise)

Preceding gene: 82544733

Following gene: 82544731

Centisome position: 50.36

GC content: 51.76

Gene sequence:

>738_bases
ATGCCAGCGCGACATTTGTACTTCATTATGACTAATACGTGGAACAGATTGGCGCTCTTGATTTTCGCCGTTTTATCGCT
GCTGGTGGCGGGTGAATTGCGGGCAGGAGTGGTGGTCGGCGGAACGCGATTTATCTTTCCGGCAGACAGAGAATCGATAT
CTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTGATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGG
AAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACTACAGGCACGTTGCG
CTTGCTGAGAACGGAAAGCGACATCTTGCCTGTGGATCGCGAAACGCTATTTGAGTTAAGCATTGCCAGCGTGCCATCCG
GCAAAGTTGAAAATCAGAGCGTAAAAGTGGCGATGCGCTCGGTATTTAAACTGTTCTGGCGACCCGAAGGTTTGCCGGGC
GACCCGCTGGAAGCTTATCAACAATTACGCTGGACACGGAATTCGCAGGGTGTACAACTCACTAACCCAACGCCTTACTA
CATTAACCTGATTCAGGTGAGCGTAAATGGTAAAGCGTTAAGTAATGCGGGAGTTGTGCCGCCTAAAAGCCAGCGTCAGA
CAAGCTGGTGTCAGGCAATCGCACCGTGTCATGTCGCCTGGCGGGCGATAAATGATTACGACGGGTTGAGTGCAAAGAAG
GAGCAAAATCTGCCCTGA

Upstream 100 bases:

>100_bases
GGAGCTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCTCAATAGCGA
TGTGCAGTCGGGTAAAGTGA

Downstream 100 bases:

>100_bases
AACAGGTTCGGAAAACGTTTGCGTTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGTCCCC
GGTTTGCACACCGGGAATCC

Product: putativi pili assembly chaperone

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 244

Protein sequence:

>245_residues
MPARHLYFIMTNTWNRLALLIFAVLSLLVAGELRAGVVVGGTRFIFPADRESISILLTNTSQESWLINSKINRPTRWAGG
KASTVPAPLLAAPPLILLKPGTTGTLRLLRTESDILPVDRETLFELSIASVPSGKVENQSVKVAMRSVFKLFWRPEGLPG
DPLEAYQQLRWTRNSQGVQLTNPTPYYINLIQVSVNGKALSNAGVVPPKSQRQTSWCQAIAPCHVAWRAINDYDGLSAKK
EQNLP

Sequences:

>Translated_245_residues
MPARHLYFIMTNTWNRLALLIFAVLSLLVAGELRAGVVVGGTRFIFPADRESISILLTNTSQESWLINSKINRPTRWAGG
KASTVPAPLLAAPPLILLKPGTTGTLRLLRTESDILPVDRETLFELSIASVPSGKVENQSVKVAMRSVFKLFWRPEGLPG
DPLEAYQQLRWTRNSQGVQLTNPTPYYINLIQVSVNGKALSNAGVVPPKSQRQTSWCQAIAPCHVAWRAINDYDGLSAKK
EQNLP
>Mature_244_residues
PARHLYFIMTNTWNRLALLIFAVLSLLVAGELRAGVVVGGTRFIFPADRESISILLTNTSQESWLINSKINRPTRWAGGK
ASTVPAPLLAAPPLILLKPGTTGTLRLLRTESDILPVDRETLFELSIASVPSGKVENQSVKVAMRSVFKLFWRPEGLPGD
PLEAYQQLRWTRNSQGVQLTNPTPYYINLIQVSVNGKALSNAGVVPPKSQRQTSWCQAIAPCHVAWRAINDYDGLSAKKE
QNLP

Specific function: Could be required for the biogenesis of a putative fimbria [H]

COG id: COG3121

COG function: function code NU; P pilus assembly protein, chaperone PapD

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI87081806, Length=236, Percent_Identity=98.3050847457627, Blast_Score=468, Evalue=1e-133,
Organism=Escherichia coli, GI1790771, Length=223, Percent_Identity=32.2869955156951, Blast_Score=124, Evalue=7e-30,
Organism=Escherichia coli, GI1787171, Length=220, Percent_Identity=33.6363636363636, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1786743, Length=236, Percent_Identity=27.5423728813559, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1789532, Length=228, Percent_Identity=27.6315789473684, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI1786333, Length=242, Percent_Identity=29.3388429752066, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI87082203, Length=216, Percent_Identity=25.462962962963, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1786936, Length=184, Percent_Identity=31.5217391304348, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1788677, Length=176, Percent_Identity=27.8409090909091, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1788428, Length=225, Percent_Identity=24, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 27040; Mature: 26908

Theoretical pI: Translated: 10.49; Mature: 10.49

Prosite motif: PS00635 PILI_CHAPERONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPARHLYFIMTNTWNRLALLIFAVLSLLVAGELRAGVVVGGTRFIFPADRESISILLTNT
CCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEECCEEEEEECCCCEEEEEEECC
SQESWLINSKINRPTRWAGGKASTVPAPLLAAPPLILLKPGTTGTLRLLRTESDILPVDR
CCCCEEEECCCCCCCCCCCCCCCCCCCCHHHCCCEEEECCCCCCEEEEEECCCCCCCCCH
ETLFELSIASVPSGKVENQSVKVAMRSVFKLFWRPEGLPGDPLEAYQQLRWTRNSQGVQL
HHHHEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCEEE
TNPTPYYINLIQVSVNGKALSNAGVVPPKSQRQTSWCQAIAPCHVAWRAINDYDGLSAKK
CCCCCEEEEEEEEEECCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHEECCCCCCCCCCC
EQNLP
CCCCC
>Mature Secondary Structure 
PARHLYFIMTNTWNRLALLIFAVLSLLVAGELRAGVVVGGTRFIFPADRESISILLTNT
CCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEECCEEEEEECCCCEEEEEEECC
SQESWLINSKINRPTRWAGGKASTVPAPLLAAPPLILLKPGTTGTLRLLRTESDILPVDR
CCCCEEEECCCCCCCCCCCCCCCCCCCCHHHCCCEEEECCCCCCEEEEEECCCCCCCCCH
ETLFELSIASVPSGKVENQSVKVAMRSVFKLFWRPEGLPGDPLEAYQQLRWTRNSQGVQL
HHHHEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCEEE
TNPTPYYINLIQVSVNGKALSNAGVVPPKSQRQTSWCQAIAPCHVAWRAINDYDGLSAKK
CCCCCEEEEEEEEEECCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHEECCCCCCCCCCC
EQNLP
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 2992959; 7984428 [H]