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The map label for this gene is ycdY [H]

Identifier: 82544498

GI number: 82544498

Start: 2000491

End: 2001045

Strand: Reverse

Name: ycdY [H]

Synonym: SBO_2033

Alternate gene names: 82544498

Gene position: 2001045-2000491 (Counterclockwise)

Preceding gene: 82544499

Following gene: 82544497

Centisome position: 44.27

GC content: 53.87

Gene sequence:

>555_bases
ATGAACGAGTTTTCTATCCTCTGTCGTGTGCTGGGTTCGCTCTATTACCGCCAACCGCAAGATCCTTTACTGGTGCCGCT
GTTTACCCTGATTCGTGAGGGGAAACTGGCTGCGAACTGGCCACTGGAGCAGGATGAGTTACTGACGCGTTTACAGAAAA
GCTGTGATATGGCGCAAGTCTCTGCCGATTACAATGCGTTGTTTATCGGCGATGAATGTGCCGTGCCGCCATATCGTAGC
GCATGGGTTGAGGACGCAACGGAAGCGGAAGTGCGCGCTTTTCTTTCCGAACGAGGGATGCCACTGGCGGATACGCCAGC
CGATCACATCGGCACATTGCTGCTTGCGGCTTCCTGGATGGAAGATCAGTCAACGGAAGATGAGAGCGAAGCACTGGAAA
CACTGTTCAGTGAGTATCTGTTACCCTGGTGTGGTGCGTTCCTCGGCAAAGTGGAGGCCCATGCAACCACGCCTTTCTGG
CGCACCATGGCACCGCTAACCCGTGATGCCATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAGTAA

Upstream 100 bases:

>100_bases
ATGTTTCTCCGCGCCGCTTACTGAACTTCCTTGAATCTCGCGGTATGGCACCGATTGCGGAATTTGCAGACCTTTAATTA
CTAGTAATGGAAATATATTA

Downstream 100 bases:

>100_bases
ATGTGATCATCGTCACTCATAACTGCAACAGATAATTTGTTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCG
TTTTCTGCTATCATGCGCGG

Product: oxidoreductase component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MNEFSILCRVLGSLYYRQPQDPLLVPLFTLIREGKLAANWPLEQDELLTRLQKSCDMAQVSADYNALFIGDECAVPPYRS
AWVEDATEAEVRAFLSERGMPLADTPADHIGTLLLAASWMEDQSTEDESEALETLFSEYLLPWCGAFLGKVEAHATTPFW
RTMAPLTRDAISAMWDELEEDSEE

Sequences:

>Translated_184_residues
MNEFSILCRVLGSLYYRQPQDPLLVPLFTLIREGKLAANWPLEQDELLTRLQKSCDMAQVSADYNALFIGDECAVPPYRS
AWVEDATEAEVRAFLSERGMPLADTPADHIGTLLLAASWMEDQSTEDESEALETLFSEYLLPWCGAFLGKVEAHATTPFW
RTMAPLTRDAISAMWDELEEDSEE
>Mature_184_residues
MNEFSILCRVLGSLYYRQPQDPLLVPLFTLIREGKLAANWPLEQDELLTRLQKSCDMAQVSADYNALFIGDECAVPPYRS
AWVEDATEAEVRAFLSERGMPLADTPADHIGTLLLAASWMEDQSTEDESEALETLFSEYLLPWCGAFLGKVEAHATTPFW
RTMAPLTRDAISAMWDELEEDSEE

Specific function: Unknown

COG id: COG3381

COG function: function code R; Uncharacterized component of anaerobic dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the torD/dmsD family [H]

Homologues:

Organism=Escherichia coli, GI1787272, Length=184, Percent_Identity=98.3695652173913, Blast_Score=369, Evalue=1e-104,
Organism=Escherichia coli, GI87081942, Length=181, Percent_Identity=30.3867403314917, Blast_Score=80, Evalue=8e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020945 [H]

Pfam domain/function: PF02613 Nitrate_red_del [H]

EC number: NA

Molecular weight: Translated: 20771; Mature: 20771

Theoretical pI: Translated: 3.88; Mature: 3.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEFSILCRVLGSLYYRQPQDPLLVPLFTLIREGKLAANWPLEQDELLTRLQKSCDMAQV
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHH
SADYNALFIGDECAVPPYRSAWVEDATEAEVRAFLSERGMPLADTPADHIGTLLLAASWM
CCCCCEEEECCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
EDQSTEDESEALETLFSEYLLPWCGAFLGKVEAHATTPFWRTMAPLTRDAISAMWDELEE
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
DSEE
CCCC
>Mature Secondary Structure
MNEFSILCRVLGSLYYRQPQDPLLVPLFTLIREGKLAANWPLEQDELLTRLQKSCDMAQV
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHH
SADYNALFIGDECAVPPYRSAWVEDATEAEVRAFLSERGMPLADTPADHIGTLLLAASWM
CCCCCEEEECCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
EDQSTEDESEALETLFSEYLLPWCGAFLGKVEAHATTPFWRTMAPLTRDAISAMWDELEE
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
DSEE
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]