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The map label for this gene is flgD [H]

Identifier: 82544459

GI number: 82544459

Start: 1964193

End: 1964888

Strand: Reverse

Name: flgD [H]

Synonym: SBO_1989

Alternate gene names: 82544459

Gene position: 1964888-1964193 (Counterclockwise)

Preceding gene: 82544460

Following gene: 82544458

Centisome position: 43.47

GC content: 54.31

Gene sequence:

>696_bases
ATGTCCATTGCGGTAACCACCACCGATCCGACAAATACCGGCGTCAGTACCACCAGCAGTAGTTCGCTCACGGGCAGCAA
CGCCGCAGATTTACAAAGCAGTTTTCTGACTTTGCTGGTGGCGCAGCTGAAAAACCAGGACCCGACCAATCCAATGGAAA
ACAACGAGCTGACGTCGCAATTGGCACAAATCAGCACGGTCAGCGGGATTGAAAAACTCAATACCATGCTCGGATCTATT
TCCGGACAGATTGATAACAGCCAGTCGTTACAGGCCAGTAACCTGATCGGTCACGGCGTGATGATCCCCGGCACAACTGT
TCTTGCGGGAACCGGCAGTGAAGAAGGGGCTGTGACCACGACCACGCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACA
AAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACCGCCGGAGTTCAC
AGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTACCGCCAGTAA
CGGTGGTACACAACTGGTTGCCCAGCCGCTGCAGTTTGCTCTGGTGCAGGGTGTGATCCGCGGCAACAGCGGTAATACGC
TGGATCTCGGCACTTACGGCACCACCACCCTCGACGAAGTACGGCAGATAATTTAA

Upstream 100 bases:

>100_bases
TGTCGGCGTCACGCAGCTATCAGGCCAATGTTGAAGTGCTCAACACGGTGAAAAGCATGATGCTGAAAACCCTTACGCTC
GGTCAATAAAGGAGAAAGCT

Downstream 100 bases:

>100_bases
GCCTTCACATTTCAGGAGTCAGTCATGGCCTTTTCTCAAGCGGTTAGCGGATTAAACGCTGCCGCCACTAACCTCGATGT
TATTGGCAACAATATTGCCA

Product: flagellar basal body rod modification protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 230

Protein sequence:

>231_residues
MSIAVTTTDPTNTGVSTTSSSSLTGSNAADLQSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTMLGSI
SGQIDNSQSLQASNLIGHGVMIPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITDKNGAVVRTIDIGELTAGVH
SFTWDGTLTDGSTAPNGSYNVAITASNGGTQLVAQPLQFALVQGVIRGNSGNTLDLGTYGTTTLDEVRQII

Sequences:

>Translated_231_residues
MSIAVTTTDPTNTGVSTTSSSSLTGSNAADLQSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTMLGSI
SGQIDNSQSLQASNLIGHGVMIPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITDKNGAVVRTIDIGELTAGVH
SFTWDGTLTDGSTAPNGSYNVAITASNGGTQLVAQPLQFALVQGVIRGNSGNTLDLGTYGTTTLDEVRQII
>Mature_230_residues
SIAVTTTDPTNTGVSTTSSSSLTGSNAADLQSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTMLGSIS
GQIDNSQSLQASNLIGHGVMIPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITDKNGAVVRTIDIGELTAGVHS
FTWDGTLTDGSTAPNGSYNVAITASNGGTQLVAQPLQFALVQGVIRGNSGNTLDLGTYGTTTLDEVRQII

Specific function: Required for flagellar hook formation. May act as a scaffolding protein [H]

COG id: COG1843

COG function: function code N; Flagellar hook capping protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgD family [H]

Homologues:

Organism=Escherichia coli, GI1787315, Length=231, Percent_Identity=99.1341991341991, Blast_Score=447, Evalue=1e-127,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005648 [H]

Pfam domain/function: PF03963 FlgD [H]

EC number: NA

Molecular weight: Translated: 23619; Mature: 23488

Theoretical pI: Translated: 3.97; Mature: 3.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIAVTTTDPTNTGVSTTSSSSLTGSNAADLQSSFLTLLVAQLKNQDPTNPMENNELTSQ
CEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
LAQISTVSGIEKLNTMLGSISGQIDNSQSLQASNLIGHGVMIPGTTVLAGTGSEEGAVTT
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCEECCCCEEEEECCCCCCCEEE
TTPFGVELQQAADKVTATITDKNGAVVRTIDIGELTAGVHSFTWDGTLTDGSTAPNGSYN
CCCCCCCHHHHHCEEEEEEECCCCCEEEEEECCHHHCCCEEEEECCEECCCCCCCCCCEE
VAITASNGGTQLVAQPLQFALVQGVIRGNSGNTLDLGTYGTTTLDEVRQII
EEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHC
>Mature Secondary Structure 
SIAVTTTDPTNTGVSTTSSSSLTGSNAADLQSSFLTLLVAQLKNQDPTNPMENNELTSQ
EEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
LAQISTVSGIEKLNTMLGSISGQIDNSQSLQASNLIGHGVMIPGTTVLAGTGSEEGAVTT
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCEECCCCEEEEECCCCCCCEEE
TTPFGVELQQAADKVTATITDKNGAVVRTIDIGELTAGVHSFTWDGTLTDGSTAPNGSYN
CCCCCCCHHHHHCEEEEEEECCCCCEEEEEECCHHHCCCEEEEECCEECCCCCCCCCCEE
VAITASNGGTQLVAQPLQFALVQGVIRGNSGNTLDLGTYGTTTLDEVRQII
EEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]