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The map label for this gene is ycfS [H]

Identifier: 82544419

GI number: 82544419

Start: 1924164

End: 1925126

Strand: Direct

Name: ycfS [H]

Synonym: SBO_1948

Alternate gene names: 82544419

Gene position: 1924164-1925126 (Clockwise)

Preceding gene: 82544418

Following gene: 82544421

Centisome position: 42.57

GC content: 53.37

Gene sequence:

>963_bases
GTGATGATCAAAACGCGTTTTTCTCGCTGGCTAACGTTTTTTACGTTCGCCGCTGCCGTGGCGCTGGCGCTACCGGCAAA
AGCCAACACCTGGCCGCTGCCGCCAGCGGGCAGTCGTCTGGTTGGCGAAAACAAATTTCATGTGGTGGAAAATGACGGTG
GTTCTCTGGAAGCCATCGCCAAAAAATATAACGTCGGCTTTCTCGCTCTGTTACAGGCTAACCCCGGCGTTGATCCTTAC
GTACCGCGCGCGGGCAGCGTGTTAACGATCCCGTTGCAAACCCTACTTCCAGACGCGCCGCGCGAAGGCATTGTGATCAA
CATTGCGGAGCTGCGTCTCTATTACTACCCGCCGGGTAAAAATTCGGTAACCGTGTATCCAATAGGTATTGGTCAGTTAG
GTGGTGACACGCTGACACCGACAATGGTGACCACCGTTTCAGACAAACGTGCAAACCCAACCTGGACGCCAACGGCAAAC
ACCCGCGCCCGTTATAAAGCACAGGGAATTGAGTTGCCTGCGGTAGTGCCGGCTGGACCGGATAACCCAATGGGCCATCA
TGCGATTCGTCTGGCGGCCTATGGCGGCGTTTATTTGCTTCATGGTACGAACGCCGATTTCGGCATTGGCATGCGGGTAA
GTTCTGGCTGTATTCGTCTGCGGGATGACGATATCAAAACACTCTTTAGCCAGGTCACCCCAGGCACCAAAGTGAATATC
ATCAACACTCCGATAAAAGTCTCTGCCGAACCAAACGGTGCGCGTCTGGTTGAAGTACATCAGCCGCTGTCAGAGAAGAT
TGATGACGATCCGCAGCTGCTGCCAATTACGCTGAATAGCGCAATGCAATCATTTAAAGATGCAGCACAAACTGACGCTG
AAGTGATGCAACATGTGATGGATGTCCGTTCCGGGATGCCGGTGGATGTCCGCCGTCATCAAGTGAGCCCACAAACTCTG
TAA

Upstream 100 bases:

>100_bases
CAAATTCTTTGCACTTCCCTGCACTATCCGACACTGTCACCATCCATAATTCAGGCTTATCTGTTTATTACAATAACCTT
ATATTTATTATGGATTTTTG

Downstream 100 bases:

>100_bases
ATCCTGGATAAAAAAAATCCCCGCGACACGGCATGTCGCGGGGAAAAAATCAGCAGTAGCAGGCATTAATGAGGGTTAAT
GCTTATTTATAAATTACTGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MMIKTRFSRWLTFFTFAAAVALALPAKANTWPLPPAGSRLVGENKFHVVENDGGSLEAIAKKYNVGFLALLQANPGVDPY
VPRAGSVLTIPLQTLLPDAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTPTAN
TRARYKAQGIELPAVVPAGPDNPMGHHAIRLAAYGGVYLLHGTNADFGIGMRVSSGCIRLRDDDIKTLFSQVTPGTKVNI
INTPIKVSAEPNGARLVEVHQPLSEKIDDDPQLLPITLNSAMQSFKDAAQTDAEVMQHVMDVRSGMPVDVRRHQVSPQTL

Sequences:

>Translated_320_residues
MMIKTRFSRWLTFFTFAAAVALALPAKANTWPLPPAGSRLVGENKFHVVENDGGSLEAIAKKYNVGFLALLQANPGVDPY
VPRAGSVLTIPLQTLLPDAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTPTAN
TRARYKAQGIELPAVVPAGPDNPMGHHAIRLAAYGGVYLLHGTNADFGIGMRVSSGCIRLRDDDIKTLFSQVTPGTKVNI
INTPIKVSAEPNGARLVEVHQPLSEKIDDDPQLLPITLNSAMQSFKDAAQTDAEVMQHVMDVRSGMPVDVRRHQVSPQTL
>Mature_320_residues
MMIKTRFSRWLTFFTFAAAVALALPAKANTWPLPPAGSRLVGENKFHVVENDGGSLEAIAKKYNVGFLALLQANPGVDPY
VPRAGSVLTIPLQTLLPDAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTPTAN
TRARYKAQGIELPAVVPAGPDNPMGHHAIRLAAYGGVYLLHGTNADFGIGMRVSSGCIRLRDDDIKTLFSQVTPGTKVNI
INTPIKVSAEPNGARLVEVHQPLSEKIDDDPQLLPITLNSAMQSFKDAAQTDAEVMQHVMDVRSGMPVDVRRHQVSPQTL

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp, also known as the Braun lipoprotein) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1787356, Length=320, Percent_Identity=99.375, Blast_Score=650, Evalue=0.0,
Organism=Escherichia coli, GI1787968, Length=300, Percent_Identity=50.6666666666667, Blast_Score=295, Evalue=2e-81,
Organism=Escherichia coli, GI1787040, Length=311, Percent_Identity=49.5176848874598, Blast_Score=290, Evalue=1e-79,
Organism=Escherichia coli, GI1788299, Length=299, Percent_Identity=49.1638795986622, Blast_Score=281, Evalue=4e-77,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01476 LysM; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 34608; Mature: 34608

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMIKTRFSRWLTFFTFAAAVALALPAKANTWPLPPAGSRLVGENKFHVVENDGGSLEAIA
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCEEEEEECCCCCHHHHH
KKYNVGFLALLQANPGVDPYVPRAGSVLTIPLQTLLPDAPREGIVINIAELRLYYYPPGK
HHCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHCCCCCCCCEEEEEEEEEEEEECCCC
NSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTPTANTRARYKAQGIELPAVVPAGP
CCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCEEECCCC
DNPMGHHAIRLAAYGGVYLLHGTNADFGIGMRVSSGCIRLRDDDIKTLFSQVTPGTKVNI
CCCCCCEEEEEEEECCEEEEECCCCCCEEEEEECCCEEEEECCHHHHHHHHCCCCCEEEE
INTPIKVSAEPNGARLVEVHQPLSEKIDDDPQLLPITLNSAMQSFKDAAQTDAEVMQHVM
EECCEEEEECCCCCEEEEECCCHHHHCCCCCCEEEEEHHHHHHHHHHHHCCHHHHHHHHH
DVRSGMPVDVRRHQVSPQTL
HHHCCCCCCHHHHCCCCCCC
>Mature Secondary Structure
MMIKTRFSRWLTFFTFAAAVALALPAKANTWPLPPAGSRLVGENKFHVVENDGGSLEAIA
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCEEEEEECCCCCHHHHH
KKYNVGFLALLQANPGVDPYVPRAGSVLTIPLQTLLPDAPREGIVINIAELRLYYYPPGK
HHCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHCCCCCCCCEEEEEEEEEEEEECCCC
NSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTPTANTRARYKAQGIELPAVVPAGP
CCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCEEECCCC
DNPMGHHAIRLAAYGGVYLLHGTNADFGIGMRVSSGCIRLRDDDIKTLFSQVTPGTKVNI
CCCCCCEEEEEEEECCEEEEECCCCCCEEEEEECCCEEEEECCHHHHHHHHCCCCCEEEE
INTPIKVSAEPNGARLVEVHQPLSEKIDDDPQLLPITLNSAMQSFKDAAQTDAEVMQHVM
EECCEEEEECCCCCEEEEECCCHHHHCCCCCCEEEEEHHHHHHHHHHHHCCHHHHHHHHH
DVRSGMPVDVRRHQVSPQTL
HHHCCCCCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]