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The map label for this gene is ycfW [H]

Identifier: 82544414

GI number: 82544414

Start: 1915974

End: 1917218

Strand: Reverse

Name: ycfW [H]

Synonym: SBO_1943

Alternate gene names: 82544414

Gene position: 1917218-1915974 (Counterclockwise)

Preceding gene: 161984922

Following gene: 82544413

Centisome position: 42.42

GC content: 51.57

Gene sequence:

>1245_bases
ATGGCGATGCCTTTATCGTTATTAATTGGCCTGCGTTTTAGTCGCGGACGGCGGCGCGGCGGCATGGTGTCGCTGATCTC
CGTCATTTCTACCATTGGCATTGCCCTCGGTGTGGCGGTATTGATCGTCGGCTTAAGCGCGATGAACGGCTTTGAACGCG
AACTGAATAACCGCATTCTGGCGGTGGTGCCGCATGGTGAAATCGAAGCGGTAAATCAGCCATGGACTAACTGGCAGGAA
GCACTGGATAAAGTGCAGAAAGTGCCGGGTATTGCCGCCGCTGCGCCGTATATCAATTTCACCGGGCTGGTGGAAAGTGG
AGCGAATCTGCGCGCAATCCAGGTGAAGGGCGTTAACCCACAACAGGAACAGCGTCTGAGCGCATTACCCTCGTTTGTTC
AGGGGGATGCGTGGCGCAATTTTAAAGCGGGCGAACAGCAAATTATCATCGGCAAAGGCGTGGCGGATGCGCTGAAAGTG
AAGCAGGGCGATTGGGTGTCGATCATGATCCCCAACTCGAATCCTGAGCATAAACTGATGCAGCCAAAACGTGTGCGTTT
GCACGTTGCGGGTATTTTGCAGTTGAGTGGCCAACTCGATCACAGTTTTGCCATGATCCCGCTGGCGGATGCCCAACAAT
ATCTTGATATGGGTTCCAGCGTGTCAGGTATTGCCCTTAAAATGACGGATGTTTTCAACGCCAATAAGCTGGTACGCGAT
GCGGGTGAAATGACCAACAGCTATGTTTATATTAAAAGCTGGATTGGTACTTACGGCTATATGTATCGCGATATCCAGAT
GATCCGCGCCATTATGTATCTGGCGATGGTACTGGTGATTGGCGTGGCCTGTTTCAACATCGTCTCCACCTTAGTGATGG
CGGTGAAAGACAAGAGTGGCGATATCGCAGTATTAAGAACGCTGGGGGCGAAAGATGGTTTAATTCGCGCCATCTTTGTC
TGGTATGGATTGCTGGCAGGGCTGTTCGGCAGCCTGTGTGGGGTGGTTATCGGCGTAGTTGTTTCACTGCAACTTACCCC
GATTATTGAGTGGATTGAAAAGCTGATCGGTCATCAGTTCCTCTCCAGCGATATTTATTTTATTGACTTCCTGCCATCGG
AATTGCACTGGCTGGACGTCTTCTACGTACTGGTCACAGCATTGTTGCTGAGTCTTTTGGCAAGTTGGTATCCGGCGCGG
CGCGCCAGTAATATTGACCCTGCGCGAGTCCTTAGCGGCCAGTAA

Upstream 100 bases:

>100_bases
TGGTCACTCACGACCTGCAACTGGCGAAACGTATGAGCCGCCAACTGGAAATGCGTGATGGACGTCTGACGGCGGAACTG
AGCCTGATGGGGGCGGAGTA

Downstream 100 bases:

>100_bases
AGGCAGTACATTAAAACAAGGAGCGGCAATGTATTACGGGTTTGATATTGGTGGAACAAAAATTGCGCTTGGCGTGTTTG
ATAGCGGTCGGCAGTTGCAG

Product: outer membrane-specific lipoprotein transporter subunit LolE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 414; Mature: 413

Protein sequence:

>414_residues
MAMPLSLLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRILAVVPHGEIEAVNQPWTNWQE
ALDKVQKVPGIAAAAPYINFTGLVESGANLRAIQVKGVNPQQEQRLSALPSFVQGDAWRNFKAGEQQIIIGKGVADALKV
KQGDWVSIMIPNSNPEHKLMQPKRVRLHVAGILQLSGQLDHSFAMIPLADAQQYLDMGSSVSGIALKMTDVFNANKLVRD
AGEMTNSYVYIKSWIGTYGYMYRDIQMIRAIMYLAMVLVIGVACFNIVSTLVMAVKDKSGDIAVLRTLGAKDGLIRAIFV
WYGLLAGLFGSLCGVVIGVVVSLQLTPIIEWIEKLIGHQFLSSDIYFIDFLPSELHWLDVFYVLVTALLLSLLASWYPAR
RASNIDPARVLSGQ

Sequences:

>Translated_414_residues
MAMPLSLLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRILAVVPHGEIEAVNQPWTNWQE
ALDKVQKVPGIAAAAPYINFTGLVESGANLRAIQVKGVNPQQEQRLSALPSFVQGDAWRNFKAGEQQIIIGKGVADALKV
KQGDWVSIMIPNSNPEHKLMQPKRVRLHVAGILQLSGQLDHSFAMIPLADAQQYLDMGSSVSGIALKMTDVFNANKLVRD
AGEMTNSYVYIKSWIGTYGYMYRDIQMIRAIMYLAMVLVIGVACFNIVSTLVMAVKDKSGDIAVLRTLGAKDGLIRAIFV
WYGLLAGLFGSLCGVVIGVVVSLQLTPIIEWIEKLIGHQFLSSDIYFIDFLPSELHWLDVFYVLVTALLLSLLASWYPAR
RASNIDPARVLSGQ
>Mature_413_residues
AMPLSLLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRILAVVPHGEIEAVNQPWTNWQEA
LDKVQKVPGIAAAAPYINFTGLVESGANLRAIQVKGVNPQQEQRLSALPSFVQGDAWRNFKAGEQQIIIGKGVADALKVK
QGDWVSIMIPNSNPEHKLMQPKRVRLHVAGILQLSGQLDHSFAMIPLADAQQYLDMGSSVSGIALKMTDVFNANKLVRDA
GEMTNSYVYIKSWIGTYGYMYRDIQMIRAIMYLAMVLVIGVACFNIVSTLVMAVKDKSGDIAVLRTLGAKDGLIRAIFVW
YGLLAGLFGSLCGVVIGVVVSLQLTPIIEWIEKLIGHQFLSSDIYFIDFLPSELHWLDVFYVLVTALLLSLLASWYPARR
ASNIDPARVLSGQ

Specific function: Part of an ATP-dependent transport system lolCDE responsible for the release of lipoproteins targeted to the outer membrane from the inner membrane. Such a release is dependent of the sorting-signal (absence of an Asp at position 2 of the mature lipoprote

COG id: COG4591

COG function: function code M; ABC-type transport system, involved in lipoprotein release, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ABC-4 integral membrane protein family. LolC/E subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787362, Length=414, Percent_Identity=99.0338164251208, Blast_Score=829, Evalue=0.0,
Organism=Escherichia coli, GI1787360, Length=415, Percent_Identity=26.7469879518072, Blast_Score=135, Evalue=4e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003838
- InterPro:   IPR011925
- InterPro:   IPR011926 [H]

Pfam domain/function: PF02687 FtsX [H]

EC number: NA

Molecular weight: Translated: 45353; Mature: 45222

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: PS00027 HOMEOBOX_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMPLSLLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRIL
CCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCEE
AVVPHGEIEAVNQPWTNWQEALDKVQKVPGIAAAAPYINFTGLVESGANLRAIQVKGVNP
EEECCCCEEECCCCCCCHHHHHHHHHHCCCCCHHCCCCEEHHHHCCCCCEEEEEEECCCC
QQEQRLSALPSFVQGDAWRNFKAGEQQIIIGKGVADALKVKQGDWVSIMIPNSNPEHKLM
HHHHHHHHCHHHHCCCCCCCCCCCCCEEEEECCHHHHHHCCCCCEEEEEECCCCCCCCCC
QPKRVRLHVAGILQLSGQLDHSFAMIPLADAQQYLDMGSSVSGIALKMTDVFNANKLVRD
CCHHHEEEHHHHHHHCCCCCCCEEEEEHHHHHHHHHCCCCCCCEEEEEHHHHCHHHHHHH
AGEMTNSYVYIKSWIGTYGYMYRDIQMIRAIMYLAMVLVIGVACFNIVSTLVMAVKDKSG
HHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
DIAVLRTLGAKDGLIRAIFVWYGLLAGLFGSLCGVVIGVVVSLQLTPIIEWIEKLIGHQF
CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSSDIYFIDFLPSELHWLDVFYVLVTALLLSLLASWYPARRASNIDPARVLSGQ
HCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCHHHHCCCC
>Mature Secondary Structure 
AMPLSLLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRIL
CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCEE
AVVPHGEIEAVNQPWTNWQEALDKVQKVPGIAAAAPYINFTGLVESGANLRAIQVKGVNP
EEECCCCEEECCCCCCCHHHHHHHHHHCCCCCHHCCCCEEHHHHCCCCCEEEEEEECCCC
QQEQRLSALPSFVQGDAWRNFKAGEQQIIIGKGVADALKVKQGDWVSIMIPNSNPEHKLM
HHHHHHHHCHHHHCCCCCCCCCCCCCEEEEECCHHHHHHCCCCCEEEEEECCCCCCCCCC
QPKRVRLHVAGILQLSGQLDHSFAMIPLADAQQYLDMGSSVSGIALKMTDVFNANKLVRD
CCHHHEEEHHHHHHHCCCCCCCEEEEEHHHHHHHHHCCCCCCCEEEEEHHHHCHHHHHHH
AGEMTNSYVYIKSWIGTYGYMYRDIQMIRAIMYLAMVLVIGVACFNIVSTLVMAVKDKSG
HHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
DIAVLRTLGAKDGLIRAIFVWYGLLAGLFGSLCGVVIGVVVSLQLTPIIEWIEKLIGHQF
CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSSDIYFIDFLPSELHWLDVFYVLVTALLLSLLASWYPARRASNIDPARVLSGQ
HCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 10783239 [H]