Click here to switch to the map view.

The map label for this gene is ymgE [H]

Identifier: 82544354

GI number: 82544354

Start: 1860519

End: 1860773

Strand: Reverse

Name: ymgE [H]

Synonym: SBO_1877

Alternate gene names: 82544354

Gene position: 1860773-1860519 (Counterclockwise)

Preceding gene: 82544357

Following gene: 82544353

Centisome position: 41.17

GC content: 53.73

Gene sequence:

>255_bases
ATGGGAATTATTGCCTGGATTATTTTTGGCCTGATAGCCGGCATTATCGCCAAGCTAATCATGCCGGGGCGTGATGGTGG
TGGATTTTTCCAGACCTGTATTCTCGGGATAGTCGGTGCGGTGGTCGGCGGCTGGCTGGCGACCATGTTTGGCATTGGCG
GCTCCATCAGCGGTTTTAATTTGCACAGCTTCCTGGTGGCGGTGGTGGGAGCTATTCTCGTTCTGGGCTTATTCCGCCTG
CTGCGAAGAGAATAA

Upstream 100 bases:

>100_bases
TCAGCCGACATACGCCCAGCATCGATCCCGCCCTTGCCTATACTTAGAGCGTTGACGTAAGCATTTCTTGCGTCCGATTC
ATCGAAACGAGGGCTTGAAC

Downstream 100 bases:

>100_bases
GATTTTCATAAGGCGGATAGCGATACAGATGCCGCTATCCGCTTTTCACATCAGAACGTATATTCGACACCTGCTTTACG
GGTGAAAAAAATCAATATAG

Product: hypothetical protein

Products: NA

Alternate protein names: Transglycosylase-associated gene protein [H]

Number of amino acids: Translated: 84; Mature: 83

Protein sequence:

>84_residues
MGIIAWIIFGLIAGIIAKLIMPGRDGGGFFQTCILGIVGAVVGGWLATMFGIGGSISGFNLHSFLVAVVGAILVLGLFRL
LRRE

Sequences:

>Translated_84_residues
MGIIAWIIFGLIAGIIAKLIMPGRDGGGFFQTCILGIVGAVVGGWLATMFGIGGSISGFNLHSFLVAVVGAILVLGLFRL
LRRE
>Mature_83_residues
GIIAWIIFGLIAGIIAKLIMPGRDGGGFFQTCILGIVGAVVGGWLATMFGIGGSISGFNLHSFLVAVVGAILVLGLFRLL
RRE

Specific function: Unknown

COG id: COG2261

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0410 family [H]

Homologues:

Organism=Escherichia coli, GI1787445, Length=84, Percent_Identity=96.4285714285714, Blast_Score=149, Evalue=4e-38,
Organism=Escherichia coli, GI1788096, Length=83, Percent_Identity=66.2650602409639, Blast_Score=90, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007341 [H]

Pfam domain/function: PF04226 Transgly_assoc [H]

EC number: NA

Molecular weight: Translated: 8732; Mature: 8601

Theoretical pI: Translated: 11.31; Mature: 11.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIIAWIIFGLIAGIIAKLIMPGRDGGGFFQTCILGIVGAVVGGWLATMFGIGGSISGFN
CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
LHSFLVAVVGAILVLGLFRLLRRE
HHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GIIAWIIFGLIAGIIAKLIMPGRDGGGFFQTCILGIVGAVVGGWLATMFGIGGSISGFN
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
LHSFLVAVVGAILVLGLFRLLRRE
HHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA