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The map label for this gene is yciT [H]

Identifier: 82544261

GI number: 82544261

Start: 1758735

End: 1759484

Strand: Direct

Name: yciT [H]

Synonym: SBO_1780

Alternate gene names: 82544261

Gene position: 1758735-1759484 (Clockwise)

Preceding gene: 82544260

Following gene: 82544262

Centisome position: 38.91

GC content: 49.6

Gene sequence:

>750_bases
ATGAATTCCCGACAACAAACTATTCTACAGATGGTCATTGACCAGGGTCAGGTTAGCGTAACCGATCTGGCAAAAGCCAC
TGGAGTTTCTGAAGTTACCATTCGCCAGGATCTCAACACCCTCGAAAAACTGAGTTACCTCCGCCGTGCACATGGCTTTG
CAGTTTCGCTTGATAGTGATGACGTCGAAACCCGTATGATGAGCAACTATACGCTGAAGCGTGAACTCGCCGAGTTTGCC
GCGTCACTGGTTCAACCGGGCGAAACCATCTTTATCGAAAATGGCAGCAGCAATGCCCTGCTCGCCCGGACTCTGGGGGA
GCAGAAGAAAAATGTCACTATCATCACGGTCAGCAGCTACATCGCGCATTTGCTGAAAGACGCGCCTTGTGAAGTCATTT
TGCTCGGTGGCGTGTACCAGAAAAAAAGCGAAAGTATGGTTGGCCCGTTGACACGCCAGTGCATCCAGCAGGTGCATTTC
AGCAAAGCATTTATTGGTATTGATGGCTGGCAACCTGAAACTGGATTCACCGGTCGCGATATGATGCGTACCGATGTGGT
CAATGCCGTGCTGGAAAAAGAGTGCGAAGTGATAGTCCTGACTGACAGCTCGAAATTTGGTGCTGTACATTCATACTCCA
TCGGTCCCGTTGAGCGATTCAATCGCGTGATTACCGATTCGAAAATACGCGCCAGCGATCTGATGCATCTTGAGCACAGT
AAACTCACCGTTCACGTCGTTGACATTTAA

Upstream 100 bases:

>100_bases
GGGAGATTTAACAATCGTGCCTTCAGGTTTTCCTATTTGAGGATGCCCGGCGCGTCAGTATTTTTTTATTTAGTATTATA
ACGTTATAAGAATTACAGCG

Downstream 100 bases:

>100_bases
CCATTTCCCTTCTCTACGGATGATTTGCAGTTTGGCAAATCATCCGCTCTAAGATGATTCCTGGTTGATAATTAAGACTA
TTTACCTGTTATTAACACGC

Product: DEOR-type transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MNSRQQTILQMVIDQGQVSVTDLAKATGVSEVTIRQDLNTLEKLSYLRRAHGFAVSLDSDDVETRMMSNYTLKRELAEFA
ASLVQPGETIFIENGSSNALLARTLGEQKKNVTIITVSSYIAHLLKDAPCEVILLGGVYQKKSESMVGPLTRQCIQQVHF
SKAFIGIDGWQPETGFTGRDMMRTDVVNAVLEKECEVIVLTDSSKFGAVHSYSIGPVERFNRVITDSKIRASDLMHLEHS
KLTVHVVDI

Sequences:

>Translated_249_residues
MNSRQQTILQMVIDQGQVSVTDLAKATGVSEVTIRQDLNTLEKLSYLRRAHGFAVSLDSDDVETRMMSNYTLKRELAEFA
ASLVQPGETIFIENGSSNALLARTLGEQKKNVTIITVSSYIAHLLKDAPCEVILLGGVYQKKSESMVGPLTRQCIQQVHF
SKAFIGIDGWQPETGFTGRDMMRTDVVNAVLEKECEVIVLTDSSKFGAVHSYSIGPVERFNRVITDSKIRASDLMHLEHS
KLTVHVVDI
>Mature_249_residues
MNSRQQTILQMVIDQGQVSVTDLAKATGVSEVTIRQDLNTLEKLSYLRRAHGFAVSLDSDDVETRMMSNYTLKRELAEFA
ASLVQPGETIFIENGSSNALLARTLGEQKKNVTIITVSSYIAHLLKDAPCEVILLGGVYQKKSESMVGPLTRQCIQQVHF
SKAFIGIDGWQPETGFTGRDMMRTDVVNAVLEKECEVIVLTDSSKFGAVHSYSIGPVERFNRVITDSKIRASDLMHLEHS
KLTVHVVDI

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787540, Length=249, Percent_Identity=99.1967871485944, Blast_Score=513, Evalue=1e-147,
Organism=Escherichia coli, GI1789519, Length=251, Percent_Identity=32.2709163346614, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1789059, Length=247, Percent_Identity=30.7692307692308, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI226510968, Length=230, Percent_Identity=29.1304347826087, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI1789829, Length=229, Percent_Identity=28.3842794759825, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1790753, Length=253, Percent_Identity=27.2727272727273, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI87082344, Length=229, Percent_Identity=25.3275109170306, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1790635, Length=252, Percent_Identity=27.3809523809524, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788069, Length=228, Percent_Identity=26.3157894736842, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1789170, Length=240, Percent_Identity=25.4166666666667, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787063, Length=233, Percent_Identity=26.6094420600858, Blast_Score=71, Evalue=9e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 27617; Mature: 27617

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSRQQTILQMVIDQGQVSVTDLAKATGVSEVTIRQDLNTLEKLSYLRRAHGFAVSLDSD
CCCHHHHHHHHHHHCCCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCC
DVETRMMSNYTLKRELAEFAASLVQPGETIFIENGSSNALLARTLGEQKKNVTIITVSSY
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEHHHHHCCCCCCEEEEEHHHH
IAHLLKDAPCEVILLGGVYQKKSESMVGPLTRQCIQQVHFSKAFIGIDGWQPETGFTGRD
HHHHHCCCCCCEEEECCCHHCCCCCCCCHHHHHHHHHHHHHHEEEECCCCCCCCCCCCHH
MMRTDVVNAVLEKECEVIVLTDSSKFGAVHSYSIGPVERFNRVITDSKIRASDLMHLEHS
HHHHHHHHHHHHCCCCEEEEECCCCCCCEEECCCCHHHHHHHHHCCCCCCHHHHHHEECC
KLTVHVVDI
EEEEEEEEC
>Mature Secondary Structure
MNSRQQTILQMVIDQGQVSVTDLAKATGVSEVTIRQDLNTLEKLSYLRRAHGFAVSLDSD
CCCHHHHHHHHHHHCCCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCC
DVETRMMSNYTLKRELAEFAASLVQPGETIFIENGSSNALLARTLGEQKKNVTIITVSSY
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEHHHHHCCCCCCEEEEEHHHH
IAHLLKDAPCEVILLGGVYQKKSESMVGPLTRQCIQQVHFSKAFIGIDGWQPETGFTGRD
HHHHHCCCCCCEEEECCCHHCCCCCCCCHHHHHHHHHHHHHHEEEECCCCCCCCCCCCHH
MMRTDVVNAVLEKECEVIVLTDSSKFGAVHSYSIGPVERFNRVITDSKIRASDLMHLEHS
HHHHHHHHHHHHCCCCEEEEECCCCCCCEEECCCCHHHHHHHHHCCCCCCHHHHHHEECC
KLTVHVVDI
EEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]