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The map label for this gene is ynaF [H]

Identifier: 82544176

GI number: 82544176

Start: 1677190

End: 1677696

Strand: Direct

Name: ynaF [H]

Synonym: SBO_1690

Alternate gene names: 82544176

Gene position: 1677190-1677696 (Clockwise)

Preceding gene: 82544175

Following gene: 82544177

Centisome position: 37.11

GC content: 47.34

Gene sequence:

>507_bases
GTGAACTCCGTCATTACACAAAAAGTGTCATCTGGCGTTACACTTTATGCGGATACTAAAACAGGAGGTTTTATGAACAG
AACGATTCTTGTCCCTATCGATATTTCAGATTCAGAATTAACTCAACGCGTGATTAGCCACGTTGAGGCAGAGGCAAAGA
TTGATGATGCAGAGGTTCATTTCCTGACGGTAATACCTTCACTGCCCTACTATGCCTCTCTGGGTTTAGCGTATTCCGCA
GAATTACCGGCAATGGATGACCTGAAAGCGGAAGCCAAATCGCAACTGGAAGAGATCATTAAAAAATTTAAACTGCCAAC
CGACAGAGTGCATGTCCATGTTGAGGAAGGCTCGCCCAAAGACCGCATTCTGGAATTGGCGAAGAAGATCCCCGCTCATA
TGATCATCATTGCTTCCCATCGACCGGATATCACCACTTATCTGCTCGGTTCCAACGCCGCAGCTGTAGTGCGTCACGCA
GAGTGCTCCGTGCTGGTTGTGCGCTGA

Upstream 100 bases:

>100_bases
TTGTCGCTTTAGGTCTGGTTTATCAGTTCTAAATCCTCCTGCCCGCTGTTATGGCGGGCTTTTTCTGCTTATTCTTCCTC
CTTTGATCTAAATTAAAAAT

Downstream 100 bases:

>100_bases
CACTAACGCCCGCACATTGCTGCGGGCTTTTTGATTCATTTCGCAAATGTGCTGACATTTTCCCCTCTAATCCGTACCAT
ACACGCCACTGTTTTTATAT

Product: filament protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 168

Protein sequence:

>168_residues
MNSVITQKVSSGVTLYADTKTGGFMNRTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYYASLGLAYSA
ELPAMDDLKAEAKSQLEEIIKKFKLPTDRVHVHVEEGSPKDRILELAKKIPAHMIIIASHRPDITTYLLGSNAAAVVRHA
ECSVLVVR

Sequences:

>Translated_168_residues
MNSVITQKVSSGVTLYADTKTGGFMNRTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYYASLGLAYSA
ELPAMDDLKAEAKSQLEEIIKKFKLPTDRVHVHVEEGSPKDRILELAKKIPAHMIIIASHRPDITTYLLGSNAAAVVRHA
ECSVLVVR
>Mature_168_residues
MNSVITQKVSSGVTLYADTKTGGFMNRTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYYASLGLAYSA
ELPAMDDLKAEAKSQLEEIIKKFKLPTDRVHVHVEEGSPKDRILELAKKIPAHMIIIASHRPDITTYLLGSNAAAVVRHA
ECSVLVVR

Specific function: Unknown

COG id: COG0589

COG function: function code T; Universal stress protein UspA and related nucleotide-binding proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the universal stress protein A family [H]

Homologues:

Organism=Escherichia coli, GI87081893, Length=144, Percent_Identity=99.3055555555556, Blast_Score=288, Evalue=2e-79,
Organism=Escherichia coli, GI1786824, Length=146, Percent_Identity=39.041095890411, Blast_Score=100, Evalue=5e-23,

Paralogues:

None

Copy number: 80 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014729
- InterPro:   IPR006015
- InterPro:   IPR006016 [H]

Pfam domain/function: PF00582 Usp [H]

EC number: NA

Molecular weight: Translated: 18446; Mature: 18446

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSVITQKVSSGVTLYADTKTGGFMNRTILVPIDISDSELTQRVISHVEAEAKIDDAEVH
CCCHHHHHHHCCEEEEEECCCCCEECCEEEEEEECCHHHHHHHHHHHHHHCCCCCCCEEE
FLTVIPSLPYYASLGLAYSAELPAMDDLKAEAKSQLEEIIKKFKLPTDRVHVHVEEGSPK
EEEEECCCCCHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCH
DRILELAKKIPAHMIIIASHRPDITTYLLGSNAAAVVRHAECSVLVVR
HHHHHHHHHCCEEEEEEECCCCCEEEEEECCCCEEEEEECCEEEEEEC
>Mature Secondary Structure
MNSVITQKVSSGVTLYADTKTGGFMNRTILVPIDISDSELTQRVISHVEAEAKIDDAEVH
CCCHHHHHHHCCEEEEEECCCCCEECCEEEEEEECCHHHHHHHHHHHHHHCCCCCCCEEE
FLTVIPSLPYYASLGLAYSAELPAMDDLKAEAKSQLEEIIKKFKLPTDRVHVHVEEGSPK
EEEEECCCCCHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCH
DRILELAKKIPAHMIIIASHRPDITTYLLGSNAAAVVRHAECSVLVVR
HHHHHHHHHCCEEEEEEECCCCCEEEEEECCCCEEEEEECCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]