Click here to switch to the map view.

The map label for this gene is ynbD [H]

Identifier: 82544162

GI number: 82544162

Start: 1661672

End: 1662964

Strand: Reverse

Name: ynbD [H]

Synonym: SBO_1676

Alternate gene names: 82544162

Gene position: 1662964-1661672 (Counterclockwise)

Preceding gene: 82544163

Following gene: 82544160

Centisome position: 36.79

GC content: 49.96

Gene sequence:

>1293_bases
TTGCTACAAGGCGCTGGCTGGTTATTGTTGCTGGCCCCGTTTTTTTTCTTCACCTATGGATCTCTTAATCAGTTCACCGC
GGTTCAGGACCTTAACAGCCATGATATCCCCAGTCAGGTATTCGGTTGGGAAACGGCGATCCCTTTTCTTCCCTGGACTA
TTGTTCCTTACTGGAGTCTGGATCTTTTATATGGATTTTCGCTGTTCGTTTGTAGCACGACATTCGAACAGCGCCGACTT
GTCCACCGGCTTATTCTGGCAACGGTAATGGCCTGCTGCGGTTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGTCC
TGAAGTGAGTGGGGTGACGGGATGGCCATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAGTCTCCTTCGCTGC
ATATTATTCTCTGCTGGCTACTTTGGCGTCACTTTCGTCAGCATCTGGCTGAGAGGTGGCGTAAAGTCTGTGGCGGATGG
TTTTTACTCATCGCTATTTCTACTCTGACGACCTGGCAGCATCATTTTATTGATGTCATCACAGGGCTGGCGGTAGGTAT
GTTGATTGACTGGATGGTGCCCGTCGATCGTCGTTGGAATTATCAGAAACCTGATCAACGTCGAATCAAAATAGCACTGC
CATATGTCGTAGGCGCGGGCTCGTGCATTGTGTTGATGGAGCTAATGGTGATGATTCAGTTATGGTGGCCAGTCTGGTTA
TGTTGGCCAGTATTATCGCTACTCATTATTGGCCGTGGGTACGGTGGGCTTGGCGCGATAACAACAGGGAAAGATAGTCA
GGGGAAACTCCCGCCCGCCGTTTACTGGCTGACATTGCCCTGGCGCATCGGGATGTGGCTGTCTATGCGTTGGTTTTGTC
GTCGCCTGGAGCCGGTGAGCAAAATTACTGCTGGTGTTTATTTAGGGGCGTTTCCACGACATATTCCGGCACAGAATGCG
GTTCTGGACGTCACCTTTGAATTCCCTCGGGGACGAGCGACAAAAGATCGACTCTATTTCTGTGTACCGATGCTGGATCT
GGTGGTTCCGGAAGAGGGGGAGCTCCGACAGGCCGTGGCGATGCTGGAAACATTACGCGAAGAGCAAGGCAGCGTTCTGG
TCCATTGCGCGTTGGGATTATCGCGCAGTGCGCTGGTAGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCGTT
GATGAAGCGATTAGTTATATTCGAGCCAGACGTTCGCATATTGTGCTTAAGGAAGATCACAAAGCGATGCTGAAATTATG
GGAAAACAGGTAA

Upstream 100 bases:

>100_bases
CGTGATGCCGGATTTGATAAATGCACACAACGGATTGATGAGTGGGGTATTTTTACGGTTTCGATGGCGGTGCGTCGTGA
TAACTGAACGTCGGAACGTA

Downstream 100 bases:

>100_bases
GTGGATTGAGATGTGGACTGAACTACAGTCCACATCAAGATCGTGTCCGGTTATGCAGCAACAATGCTGTCGATGGCCGC
TTTCGCGTCAGACTGCGCTT

Product: enzyme

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 430; Mature: 430

Protein sequence:

>430_residues
MLQGAGWLLLLAPFFFFTYGSLNQFTAVQDLNSHDIPSQVFGWETAIPFLPWTIVPYWSLDLLYGFSLFVCSTTFEQRRL
VHRLILATVMACCGFLLYPLKFSFIRPEVSGVTGWPFSQLELFDLPYNQSPSLHIILCWLLWRHFRQHLAERWRKVCGGW
FLLIAISTLTTWQHHFIDVITGLAVGMLIDWMVPVDRRWNYQKPDQRRIKIALPYVVGAGSCIVLMELMVMIQLWWPVWL
CWPVLSLLIIGRGYGGLGAITTGKDSQGKLPPAVYWLTLPWRIGMWLSMRWFCRRLEPVSKITAGVYLGAFPRHIPAQNA
VLDVTFEFPRGRATKDRLYFCVPMLDLVVPEEGELRQAVAMLETLREEQGSVLVHCALGLSRSALVVAAWLLCYGHCKTV
DEAISYIRARRSHIVLKEDHKAMLKLWENR

Sequences:

>Translated_430_residues
MLQGAGWLLLLAPFFFFTYGSLNQFTAVQDLNSHDIPSQVFGWETAIPFLPWTIVPYWSLDLLYGFSLFVCSTTFEQRRL
VHRLILATVMACCGFLLYPLKFSFIRPEVSGVTGWPFSQLELFDLPYNQSPSLHIILCWLLWRHFRQHLAERWRKVCGGW
FLLIAISTLTTWQHHFIDVITGLAVGMLIDWMVPVDRRWNYQKPDQRRIKIALPYVVGAGSCIVLMELMVMIQLWWPVWL
CWPVLSLLIIGRGYGGLGAITTGKDSQGKLPPAVYWLTLPWRIGMWLSMRWFCRRLEPVSKITAGVYLGAFPRHIPAQNA
VLDVTFEFPRGRATKDRLYFCVPMLDLVVPEEGELRQAVAMLETLREEQGSVLVHCALGLSRSALVVAAWLLCYGHCKTV
DEAISYIRARRSHIVLKEDHKAMLKLWENR
>Mature_430_residues
MLQGAGWLLLLAPFFFFTYGSLNQFTAVQDLNSHDIPSQVFGWETAIPFLPWTIVPYWSLDLLYGFSLFVCSTTFEQRRL
VHRLILATVMACCGFLLYPLKFSFIRPEVSGVTGWPFSQLELFDLPYNQSPSLHIILCWLLWRHFRQHLAERWRKVCGGW
FLLIAISTLTTWQHHFIDVITGLAVGMLIDWMVPVDRRWNYQKPDQRRIKIALPYVVGAGSCIVLMELMVMIQLWWPVWL
CWPVLSLLIIGRGYGGLGAITTGKDSQGKLPPAVYWLTLPWRIGMWLSMRWFCRRLEPVSKITAGVYLGAFPRHIPAQNA
VLDVTFEFPRGRATKDRLYFCVPMLDLVVPEEGELRQAVAMLETLREEQGSVLVHCALGLSRSALVVAAWLLCYGHCKTV
DEAISYIRARRSHIVLKEDHKAMLKLWENR

Specific function: Unknown

COG id: COG0671

COG function: function code I; Membrane-associated phospholipid phosphatase

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the protein-tyrosine phosphatase family [H]

Homologues:

Organism=Escherichia coli, GI1787679, Length=430, Percent_Identity=97.2093023255814, Blast_Score=830, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000387
- InterPro:   IPR000340
- InterPro:   IPR020422
- InterPro:   IPR000326
- InterPro:   IPR016130 [H]

Pfam domain/function: PF00782 DSPc; PF01569 PAP2 [H]

EC number: NA

Molecular weight: Translated: 49589; Mature: 49589

Theoretical pI: Translated: 8.77; Mature: 8.77

Prosite motif: PS00383 TYR_PHOSPHATASE_1 ; PS50056 TYR_PHOSPHATASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHCCC
>Mature Secondary Structure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HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]