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The map label for this gene is gapC [H]

Identifier: 82544157

GI number: 82544157

Start: 1653212

End: 1654162

Strand: Direct

Name: gapC [H]

Synonym: SBO_1671

Alternate gene names: 82544157

Gene position: 1653212-1654162 (Clockwise)

Preceding gene: 82544154

Following gene: 82544161

Centisome position: 36.58

GC content: 48.69

Gene sequence:

>951_bases
GTGGCCAAATTCAGTGTGCCACTTCACATAGACGTTGTCGCTATTAATGATCTCACTTCCCCAAAAATTCTCGCCTACCT
GCTGAAACATGATTCAAACTACGGACCATTCCCCTGGAGCGTTGATTTTACGGAAGATTCACTTATCGTTGATGGGAAAA
GTATCGCGGTTTACGCCGAAAAAGAGGCTAAAAATATTCCGTGGAAAGCGAAAGGTGCAGAAATCATTGTCGAATGTACT
GGCTTTTATACCTCCGCCGAGAAATCGCAGGCGCATCTTGATGCTGGTGCGAAGAAGGTGTTGATTTCCGCCCCTGCCGG
TGAAATGAAAACTATCGTTTATAACGTCAATGACGACACTCTGGATGGCAACGACACCATTGTTTCCGTGGCGTCATGCA
CCACTAACTGTCTTGCGCCGATGGCCAAAGCCTTGCATGACAGTTTCGGGATAGAAGTCGGCACGATGACGACCATTCAT
GCCTATACTGGCACCCAGTCACTGGTGGATGGCCCACGTGGTAAAGATTTACGTGCTTCACGCGCAGCGGCAGAAAATAT
CATTCCCCACACTACGGGGGCGGCAAAAGCCATTGGTCTGGAGATCCCGGAACTGAGCGGCAAACTGAAAGGTCATGCGC
AACGCGTGCCGGTGAAAACAGGTTCGGTCACTGAACTGGTATCGATTCTCGGAAAAAAAGCGACTGCCGAAGAGGTGAAT
AACGCACTTAAACAAGCAACCACCAATAACGAGTCATTTGGTTATACCGATGAAGAAATAGTCTCTTCCGATATCATTGG
CAGCCATTTCGGTTCGGTGTTTGATGCCACGCAAACGGAAATTACCGCCGTGGGCGATTTACAACTGGTGAAAACGGTCG
CCTGGTACGATAACGAATATGGCTTCGTCACGCAGCTTATTCGCACCCTCGAAAAATTCGCTAAACTCTGA

Upstream 100 bases:

>100_bases
AACCAGTTGAGCGGATTCGCGTTTAAACTCTGCGCTAAAATTTCTTTTTTTCATTGGAGCACCTGTGTTGTTCTGAGGTG
AGCATATCACCTCTGTTCAG

Downstream 100 bases:

>100_bases
CGCGCACAGGCGGAGGAAAAAACCTCCGCCTCTTTTACTCATTACGACTGTAAATAAACCACCTGGGTCTGCAGATATTC
ATGCAGGCCATGTTTACCAT

Product: glyceraldehyde-3-phosphate dehydrogenase

Products: NA

Alternate protein names: GAPDH-C [H]

Number of amino acids: Translated: 316; Mature: 315

Protein sequence:

>316_residues
MAKFSVPLHIDVVAINDLTSPKILAYLLKHDSNYGPFPWSVDFTEDSLIVDGKSIAVYAEKEAKNIPWKAKGAEIIVECT
GFYTSAEKSQAHLDAGAKKVLISAPAGEMKTIVYNVNDDTLDGNDTIVSVASCTTNCLAPMAKALHDSFGIEVGTMTTIH
AYTGTQSLVDGPRGKDLRASRAAAENIIPHTTGAAKAIGLEIPELSGKLKGHAQRVPVKTGSVTELVSILGKKATAEEVN
NALKQATTNNESFGYTDEEIVSSDIIGSHFGSVFDATQTEITAVGDLQLVKTVAWYDNEYGFVTQLIRTLEKFAKL

Sequences:

>Translated_316_residues
MAKFSVPLHIDVVAINDLTSPKILAYLLKHDSNYGPFPWSVDFTEDSLIVDGKSIAVYAEKEAKNIPWKAKGAEIIVECT
GFYTSAEKSQAHLDAGAKKVLISAPAGEMKTIVYNVNDDTLDGNDTIVSVASCTTNCLAPMAKALHDSFGIEVGTMTTIH
AYTGTQSLVDGPRGKDLRASRAAAENIIPHTTGAAKAIGLEIPELSGKLKGHAQRVPVKTGSVTELVSILGKKATAEEVN
NALKQATTNNESFGYTDEEIVSSDIIGSHFGSVFDATQTEITAVGDLQLVKTVAWYDNEYGFVTQLIRTLEKFAKL
>Mature_315_residues
AKFSVPLHIDVVAINDLTSPKILAYLLKHDSNYGPFPWSVDFTEDSLIVDGKSIAVYAEKEAKNIPWKAKGAEIIVECTG
FYTSAEKSQAHLDAGAKKVLISAPAGEMKTIVYNVNDDTLDGNDTIVSVASCTTNCLAPMAKALHDSFGIEVGTMTTIHA
YTGTQSLVDGPRGKDLRASRAAAENIIPHTTGAAKAIGLEIPELSGKLKGHAQRVPVKTGSVTELVSILGKKATAEEVNN
ALKQATTNNESFGYTDEEIVSSDIIGSHFGSVFDATQTEITAVGDLQLVKTVAWYDNEYGFVTQLIRTLEKFAKL

Specific function: Second phase of glycolysis; first step. [C]

COG id: COG0057

COG function: function code G; Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glyceraldehyde-3-phosphate dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI7657116, Length=306, Percent_Identity=44.4444444444444, Blast_Score=255, Evalue=4e-68,
Organism=Homo sapiens, GI7669492, Length=308, Percent_Identity=43.5064935064935, Blast_Score=252, Evalue=3e-67,
Organism=Escherichia coli, GI1788079, Length=309, Percent_Identity=44.9838187702265, Blast_Score=250, Evalue=7e-68,
Organism=Escherichia coli, GI1789295, Length=304, Percent_Identity=38.8157894736842, Blast_Score=211, Evalue=6e-56,
Organism=Caenorhabditis elegans, GI32566163, Length=314, Percent_Identity=44.2675159235669, Blast_Score=244, Evalue=4e-65,
Organism=Caenorhabditis elegans, GI17568413, Length=314, Percent_Identity=44.2675159235669, Blast_Score=244, Evalue=5e-65,
Organism=Caenorhabditis elegans, GI17534677, Length=307, Percent_Identity=45.2768729641694, Blast_Score=242, Evalue=1e-64,
Organism=Caenorhabditis elegans, GI17534679, Length=307, Percent_Identity=44.9511400651466, Blast_Score=241, Evalue=3e-64,
Organism=Saccharomyces cerevisiae, GI6321631, Length=311, Percent_Identity=43.7299035369775, Blast_Score=261, Evalue=1e-70,
Organism=Saccharomyces cerevisiae, GI6322468, Length=314, Percent_Identity=44.2675159235669, Blast_Score=256, Evalue=3e-69,
Organism=Saccharomyces cerevisiae, GI6322409, Length=310, Percent_Identity=43.5483870967742, Blast_Score=255, Evalue=6e-69,
Organism=Drosophila melanogaster, GI19922412, Length=301, Percent_Identity=45.1827242524917, Blast_Score=259, Evalue=2e-69,
Organism=Drosophila melanogaster, GI17933600, Length=304, Percent_Identity=45.3947368421053, Blast_Score=251, Evalue=3e-67,
Organism=Drosophila melanogaster, GI18110149, Length=304, Percent_Identity=45.3947368421053, Blast_Score=251, Evalue=3e-67,
Organism=Drosophila melanogaster, GI85725000, Length=303, Percent_Identity=45.5445544554455, Blast_Score=251, Evalue=6e-67,
Organism=Drosophila melanogaster, GI22023983, Length=303, Percent_Identity=45.5445544554455, Blast_Score=251, Evalue=6e-67,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020831
- InterPro:   IPR020830
- InterPro:   IPR020829
- InterPro:   IPR020828
- InterPro:   IPR006424
- InterPro:   IPR016040 [H]

Pfam domain/function: PF02800 Gp_dh_C; PF00044 Gp_dh_N [H]

EC number: =1.2.1.12 [H]

Molecular weight: Translated: 33867; Mature: 33735

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: PS00071 GAPDH ; PS00430 TONB_DEPENDENT_REC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKFSVPLHIDVVAINDLTSPKILAYLLKHDSNYGPFPWSVDFTEDSLIVDGKSIAVYAE
CCCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCEEECCCEEEEEEE
KEAKNIPWKAKGAEIIVECTGFYTSAEKSQAHLDAGAKKVLISAPAGEMKTIVYNVNDDT
CCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHCCCCCEEEEECCCCCEEEEEEECCCCC
LDGNDTIVSVASCTTNCLAPMAKALHDSFGIEVGTMTTIHAYTGTQSLVDGPRGKDLRAS
CCCCCCEEEEHHHHHHHHHHHHHHHHHHHCEEECCEEEEEEECCCHHHHCCCCCCCCHHH
RAAAENIIPHTTGAAKAIGLEIPELSGKLKGHAQRVPVKTGSVTELVSILGKKATAEEVN
HHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHCCCCCHHHHH
NALKQATTNNESFGYTDEEIVSSDIIGSHFGSVFDATQTEITAVGDLQLVKTVAWYDNEY
HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCC
GFVTQLIRTLEKFAKL
HHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AKFSVPLHIDVVAINDLTSPKILAYLLKHDSNYGPFPWSVDFTEDSLIVDGKSIAVYAE
CCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCEEECCCEEEEEEE
KEAKNIPWKAKGAEIIVECTGFYTSAEKSQAHLDAGAKKVLISAPAGEMKTIVYNVNDDT
CCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHCCCCCEEEEECCCCCEEEEEEECCCCC
LDGNDTIVSVASCTTNCLAPMAKALHDSFGIEVGTMTTIHAYTGTQSLVDGPRGKDLRAS
CCCCCCEEEEHHHHHHHHHHHHHHHHHHHCEEECCEEEEEEECCCHHHHCCCCCCCCHHH
RAAAENIIPHTTGAAKAIGLEIPELSGKLKGHAQRVPVKTGSVTELVSILGKKATAEEVN
HHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHCCCCCHHHHH
NALKQATTNNESFGYTDEEIVSSDIIGSHFGSVFDATQTEITAVGDLQLVKTVAWYDNEY
HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCC
GFVTQLIRTLEKFAKL
HHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]