Click here to switch to the map view.

The map label for this gene is ydcK [H]

Identifier: 82544147

GI number: 82544147

Start: 1641845

End: 1642609

Strand: Direct

Name: ydcK [H]

Synonym: SBO_1659

Alternate gene names: 82544147

Gene position: 1641845-1642609 (Clockwise)

Preceding gene: 82544144

Following gene: 82544150

Centisome position: 36.33

GC content: 48.37

Gene sequence:

>765_bases
GTGATTTCTGGTAATACGCGTATCACCGGCACCAGCGTGCTGTGGGGAGAGGTTTACGCAACGGATAACGTCTGGATCGA
TAATAGTGAAATCAGTCAGGGTGCATATATAAGTGACAGTGTCACCATTCATGACTCATTAGTTTACGGGCAATGTAGAA
TATTTGGTCACGCCTTAATTGATCAACATTCTATGATCGTCGCCGCACAAGGCTTAACGCCCGACCATCAACTCCTGCTC
CAAATTTATGATCGCGCAAGGGTTAGCGCCTCGCGTATTGTCCACCAGGCACAAATTTATGGCGATGCCGTCGTCCGGTA
TGCTTTTATTGAACATCGCGCCGAAGTTTTTGATTTTGCCAGTGTTGAAGGTAATGAAGAGAACAACGTCTGGCTATGCG
ATTGCGCTAAAGTCTACGGTCACGCGCAGGTGAAAGCTGGCATAGAAGAAGATGCCATTCCGACGATTCATTACAGTTCG
CAGGTGGCGGAATATGCCATTGTGGAAGGTAATTGTGTGTTAAAACATCATGTCTTGATTGGCGGAAATGCCGTGGTACG
TGGTGAACCGATTCTGCTCGACGAGCACGTTGTAATACAAGGTGAGAGCCGTATTTCAGGTGCGGTGATAATTGAAAACC
ATGTGGAGTTAACCGACCACGCCGTCGTTGAAGCCTTTGATGGCGACACGGTTCATGTCCGTGGTCCAAAAGTCATTAAC
GGCGAGGAGCGCATTACGCGAACGCCGCTGGCAGGGTTATTATGA

Upstream 100 bases:

>100_bases
AGCAGGAACCGCTGGCGGCTGGATCGATCGCGAAACGGTGTTAGCATAGGAAGGAAATTGCTGGATTTACGACCAGAATG
CTATTGCGTTCGGCGGAACG

Downstream 100 bases:

>100_bases
ATCGATAATACGCGCGTATAAGTTCACATCATCATAGGCATCATTCAGGAACTCAGCCTGTTTCAGGCAACCTTCAAGGA
TAAAACCATTGCGCAAAGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MISGNTRITGTSVLWGEVYATDNVWIDNSEISQGAYISDSVTIHDSLVYGQCRIFGHALIDQHSMIVAAQGLTPDHQLLL
QIYDRARVSASRIVHQAQIYGDAVVRYAFIEHRAEVFDFASVEGNEENNVWLCDCAKVYGHAQVKAGIEEDAIPTIHYSS
QVAEYAIVEGNCVLKHHVLIGGNAVVRGEPILLDEHVVIQGESRISGAVIIENHVELTDHAVVEAFDGDTVHVRGPKVIN
GEERITRTPLAGLL

Sequences:

>Translated_254_residues
MISGNTRITGTSVLWGEVYATDNVWIDNSEISQGAYISDSVTIHDSLVYGQCRIFGHALIDQHSMIVAAQGLTPDHQLLL
QIYDRARVSASRIVHQAQIYGDAVVRYAFIEHRAEVFDFASVEGNEENNVWLCDCAKVYGHAQVKAGIEEDAIPTIHYSS
QVAEYAIVEGNCVLKHHVLIGGNAVVRGEPILLDEHVVIQGESRISGAVIIENHVELTDHAVVEAFDGDTVHVRGPKVIN
GEERITRTPLAGLL
>Mature_254_residues
MISGNTRITGTSVLWGEVYATDNVWIDNSEISQGAYISDSVTIHDSLVYGQCRIFGHALIDQHSMIVAAQGLTPDHQLLL
QIYDRARVSASRIVHQAQIYGDAVVRYAFIEHRAEVFDFASVEGNEENNVWLCDCAKVYGHAQVKAGIEEDAIPTIHYSS
QVAEYAIVEGNCVLKHHVLIGGNAVVRGEPILLDEHVVIQGESRISGAVIIENHVELTDHAVVEAFDGDTVHVRGPKVIN
GEERITRTPLAGLL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transferase hexapeptide repeat family [H]

Homologues:

Organism=Escherichia coli, GI1787698, Length=254, Percent_Identity=98.0314960629921, Blast_Score=509, Evalue=1e-146,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011004 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27844; Mature: 27844

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISGNTRITGTSVLWGEVYATDNVWIDNSEISQGAYISDSVTIHDSLVYGQCRIFGHALI
CCCCCEEEEEEEEEEEEEEECCCEEEECCCCCCCCEECCCEEEEEEEEEEEEEEEEHHHH
DQHSMIVAAQGLTPDHQLLLQIYDRARVSASRIVHQAQIYGDAVVRYAFIEHRAEVFDFA
CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE
SVEGNEENNVWLCDCAKVYGHAQVKAGIEEDAIPTIHYSSQVAEYAIVEGNCVLKHHVLI
ECCCCCCCCEEEEEEHHHHCCEEEECCCCCCCCCEEEECCCCEEEEEEECCEEEEEEEEE
GGNAVVRGEPILLDEHVVIQGESRISGAVIIENHVELTDHAVVEAFDGDTVHVRGPKVIN
CCCEEEECCCEEEECEEEEECCCCCCEEEEEECCCEECCCEEEEECCCCEEEEECCEEEC
GEERITRTPLAGLL
CCCCEEECCHHCCC
>Mature Secondary Structure
MISGNTRITGTSVLWGEVYATDNVWIDNSEISQGAYISDSVTIHDSLVYGQCRIFGHALI
CCCCCEEEEEEEEEEEEEEECCCEEEECCCCCCCCEECCCEEEEEEEEEEEEEEEEHHHH
DQHSMIVAAQGLTPDHQLLLQIYDRARVSASRIVHQAQIYGDAVVRYAFIEHRAEVFDFA
CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE
SVEGNEENNVWLCDCAKVYGHAQVKAGIEEDAIPTIHYSSQVAEYAIVEGNCVLKHHVLI
ECCCCCCCCEEEEEEHHHHCCEEEECCCCCCCCCEEEECCCCEEEEEEECCEEEEEEEEE
GGNAVVRGEPILLDEHVVIQGESRISGAVIIENHVELTDHAVVEAFDGDTVHVRGPKVIN
CCCEEEECCCEEEECEEEEECCCCCCEEEEEECCCEECCCEEEEECCCCEEEEECCEEEC
GEERITRTPLAGLL
CCCCEEECCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]