| Definition | Shigella boydii Sb227, complete genome. |
|---|---|
| Accession | NC_007613 |
| Length | 4,519,823 |
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The map label for this gene is 82544118
Identifier: 82544118
GI number: 82544118
Start: 1615990
End: 1616571
Strand: Reverse
Name: 82544118
Synonym: SBO_1627
Alternate gene names: NA
Gene position: 1616571-1615990 (Counterclockwise)
Preceding gene: 82544119
Following gene: 82544117
Centisome position: 35.77
GC content: 56.53
Gene sequence:
>582_bases ATGAGCAGAACGAAAAAGGTGAGCCGGTCACCTGGCAGGGGCGACAGTATCAGCCGTATCCCATTCAGGGGGAGTGGTTT TGAACTGAATGGCAAAGGCACCAGTACGCGCCCCACGCTGACGGTTTCTAACCTGTACGGTATGGTCGCCGGGATGGCGG AAGATCTGCAGAGTCTGGTCGGCGGAACGGTGGTCCGGCGTAAGGTTTACGCCCGTTTTCTGGATGCGGTGAACTTCGTC AACGGAAACAGTGACGCCGATCCGGAGCAGGAGGTGATCAGCCGCTGGCGCATCGAGCAGTGCAGCGAACTGAGCGCGGT CAGTGCCTCTTTTGTGCTGGCCACACCAACGGAGACGGATGGCGCGGTTTTCCCGGGGCGTATCATGCTGGCGAATACCT GTATGTGGACCTACCGTTCTGATGAGTGTGGTTACACGGGCAGGGCAGTGGCTGACGAGTTCGACAAACCAACGACGGAT ATCCGGAAGGACAAATGCAGCAAGTGTATGCGCGGGTGTGAGTTGCGCAACAATACCGGTAATTTCGGCGGTTTCCTTTC CATCAATAAACTTTCTCAGTAA
Upstream 100 bases:
>100_bases GAAACACTGAATGAATGCACCCGTGCGGAGCAGTCGGCCAGCGTGGTGCTCTGGGAAATCGACCTGACAGAGGTCGGTGG AGAACGTTATTTTTTCTGTA
Downstream 100 bases:
>100_bases ATCCATGACACAGACAGAATCAGCGATTCTGGCGCACGCCCGGCGATGTGCGCCAGCGGAGTCGTGTGGCTTCGTGGTGA GAACGCCGGAGGGGGAGCGG
Product: minor tail protein
Products: NA
Alternate protein names: Minor Tail Protein L; Minor Tail Protein; Phage Protein; Phage Minor Tail Protein; Phage-Related Minor Tail Protein L; Phage Tail Protein; Gifsy-2 Prophage Minor Tail Protein; Phage Tail Component L-Like Protein; Minor Tail Fiber Protein L; Bacteriophage Tail Protein; Prophage LambdaSo Minor Tail Protein L; Gifsy-1 Prophage VmtL; Phage-Related Protein; Gp65 Phage Protein
Number of amino acids: Translated: 193; Mature: 192
Protein sequence:
>193_residues MSRTKKVSRSPGRGDSISRIPFRGSGFELNGKGTSTRPTLTVSNLYGMVAGMAEDLQSLVGGTVVRRKVYARFLDAVNFV NGNSDADPEQEVISRWRIEQCSELSAVSASFVLATPTETDGAVFPGRIMLANTCMWTYRSDECGYTGRAVADEFDKPTTD IRKDKCSKCMRGCELRNNTGNFGGFLSINKLSQ
Sequences:
>Translated_193_residues MSRTKKVSRSPGRGDSISRIPFRGSGFELNGKGTSTRPTLTVSNLYGMVAGMAEDLQSLVGGTVVRRKVYARFLDAVNFV NGNSDADPEQEVISRWRIEQCSELSAVSASFVLATPTETDGAVFPGRIMLANTCMWTYRSDECGYTGRAVADEFDKPTTD IRKDKCSKCMRGCELRNNTGNFGGFLSINKLSQ >Mature_192_residues SRTKKVSRSPGRGDSISRIPFRGSGFELNGKGTSTRPTLTVSNLYGMVAGMAEDLQSLVGGTVVRRKVYARFLDAVNFVN GNSDADPEQEVISRWRIEQCSELSAVSASFVLATPTETDGAVFPGRIMLANTCMWTYRSDECGYTGRAVADEFDKPTTDI RKDKCSKCMRGCELRNNTGNFGGFLSINKLSQ
Specific function: Unknown
COG id: COG4672
COG function: function code S; Phage-related protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21119; Mature: 20988
Theoretical pI: Translated: 8.83; Mature: 8.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.1 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 3.1 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRTKKVSRSPGRGDSISRIPFRGSGFELNGKGTSTRPTLTVSNLYGMVAGMAEDLQSLV CCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEHHHHHHHHHHHHHHHHHHH GGTVVRRKVYARFLDAVNFVNGNSDADPEQEVISRWRIEQCSELSAVSASFVLATPTETD HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCC GAVFPGRIMLANTCMWTYRSDECGYTGRAVADEFDKPTTDIRKDKCSKCMRGCELRNNTG CCCCCCEEEEEEEEEEEEECCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCC NFGGFLSINKLSQ CCCCEEEECCCCC >Mature Secondary Structure SRTKKVSRSPGRGDSISRIPFRGSGFELNGKGTSTRPTLTVSNLYGMVAGMAEDLQSLV CCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEHHHHHHHHHHHHHHHHHHH GGTVVRRKVYARFLDAVNFVNGNSDADPEQEVISRWRIEQCSELSAVSASFVLATPTETD HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCC GAVFPGRIMLANTCMWTYRSDECGYTGRAVADEFDKPTTDIRKDKCSKCMRGCELRNNTG CCCCCCEEEEEEEEEEEEECCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCC NFGGFLSINKLSQ CCCCEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA