| Definition | Shigella boydii Sb227, complete genome. |
|---|---|
| Accession | NC_007613 |
| Length | 4,519,823 |
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The map label for this gene is 82544117
Identifier: 82544117
GI number: 82544117
Start: 1615242
End: 1615796
Strand: Reverse
Name: 82544117
Synonym: SBO_1626
Alternate gene names: NA
Gene position: 1615796-1615242 (Counterclockwise)
Preceding gene: 82544118
Following gene: 82544116
Centisome position: 35.75
GC content: 58.92
Gene sequence:
>555_bases GTGGCACTGGTCCACAGTCATCCCGGTGGTCTGCCCTGGCTGAGTGAGGCTGACCGGCGGCTGCAGGTGCAGAGTGATTT GCCGTGGTGGCTGGTCTGCCGGGGGGCGATTCACAAGTTCCGCTGTGTGCCGCATCTCACCGGGCGGCGCTTTGAGCACG GGGTGACGGACTGTTACACGCTGTTCCGGGATGCTTATCATCTGGCGGGGATTGAGATGCCGGATTTTCATCGCGGGGAT GACTGGTGGCGTCACGGTCAGAATCTCTATCTGGATAATCTGGAGGCCACAGGGCTGTATCAGGTGCCGTTGTCATCAGC ACAACCGGGCGATGTGCTGCTGTGCTGTTTTGGTTCATCGGTGCCGAATCATGCCGCCATTTACTGCGGCGACGGTGAGC TGCTGCACCATATTCCTGAACAACTGAGTAAACGAGAGAGGTATACCGACAAATGGCAGCGACGCACACACTCCCTCTGG CGTCACCGGGAATGGCACGCATCTGCCTTTACGGGGATTTGCAACGATTTGGCCGCCGCATCGACCTTCGTGTGA
Upstream 100 bases:
>100_bases GGAGCGGTATATCCCTTGTGTGAATATTTCTGCAGAGCCGGAGGCGTATTTTCGTATCGCACCGGAAGACTGGCTGCGGG CAGAGATGCAGGGGGAGATT
Downstream 100 bases:
>100_bases AAACGGGGGCTGAAGCCATCCGCGCACTGGCCACACAGCTCCCGGCGTTTCGTCAGAAACTGAGTGACGGCTGGTATCAG GTGCGCATTGCCGGGCGTGA
Product: tail assembly protein
Products: NA
Alternate protein names: Tail Assembly Protein; Tail Assembly Protein K; Phage Tail Assembly Protein; Prophage LambdaSo Tail Assembly Protein K; Phage Minor Tail Protein; Gifsy-2 Prophage Tail Assembly Protein; Phage-Related Tail Assembly Protein K; Tail Assembly Protein K-Like; Tail Fiber Component; NlpC/P60 Family Protein; Bacteriophage Tail Protein; Tail Fiber Component K Of Prophage; Phage Protein; Metal-Dependent Protease; Tail Fiber Component K
Number of amino acids: Translated: 184; Mature: 183
Protein sequence:
>184_residues MALVHSHPGGLPWLSEADRRLQVQSDLPWWLVCRGAIHKFRCVPHLTGRRFEHGVTDCYTLFRDAYHLAGIEMPDFHRGD DWWRHGQNLYLDNLEATGLYQVPLSSAQPGDVLLCCFGSSVPNHAAIYCGDGELLHHIPEQLSKRERYTDKWQRRTHSLW RHREWHASAFTGICNDLAAASTFV
Sequences:
>Translated_184_residues MALVHSHPGGLPWLSEADRRLQVQSDLPWWLVCRGAIHKFRCVPHLTGRRFEHGVTDCYTLFRDAYHLAGIEMPDFHRGD DWWRHGQNLYLDNLEATGLYQVPLSSAQPGDVLLCCFGSSVPNHAAIYCGDGELLHHIPEQLSKRERYTDKWQRRTHSLW RHREWHASAFTGICNDLAAASTFV >Mature_183_residues ALVHSHPGGLPWLSEADRRLQVQSDLPWWLVCRGAIHKFRCVPHLTGRRFEHGVTDCYTLFRDAYHLAGIEMPDFHRGDD WWRHGQNLYLDNLEATGLYQVPLSSAQPGDVLLCCFGSSVPNHAAIYCGDGELLHHIPEQLSKRERYTDKWQRRTHSLWR HREWHASAFTGICNDLAAASTFV
Specific function: Unknown
COG id: COG0791
COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21185; Mature: 21054
Theoretical pI: Translated: 7.19; Mature: 7.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.8 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 3.8 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALVHSHPGGLPWLSEADRRLQVQSDLPWWLVCRGAIHKFRCVPHLTGRRFEHGVTDCYT CCEECCCCCCCCCHHHHHHEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCHHHHHH LFRDAYHLAGIEMPDFHRGDDWWRHGQNLYLDNLEATGLYQVPLSSAQPGDVLLCCFGSS HHHHHHHHCCCCCCCCCCCCHHHHCCCCEEEECCCCCCEEECCCCCCCCCCEEEEEECCC VPNHAAIYCGDGELLHHIPEQLSKRERYTDKWQRRTHSLWRHREWHASAFTGICNDLAAA CCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH STFV HCCC >Mature Secondary Structure ALVHSHPGGLPWLSEADRRLQVQSDLPWWLVCRGAIHKFRCVPHLTGRRFEHGVTDCYT CEECCCCCCCCCHHHHHHEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCHHHHHH LFRDAYHLAGIEMPDFHRGDDWWRHGQNLYLDNLEATGLYQVPLSSAQPGDVLLCCFGSS HHHHHHHHCCCCCCCCCCCCHHHHCCCCEEEECCCCCCEEECCCCCCCCCCEEEEEECCC VPNHAAIYCGDGELLHHIPEQLSKRERYTDKWQRRTHSLWRHREWHASAFTGICNDLAAA CCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH STFV HCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA