| Definition | Shigella boydii Sb227, complete genome. |
|---|---|
| Accession | NC_007613 |
| Length | 4,519,823 |
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The map label for this gene is 82544111
Identifier: 82544111
GI number: 82544111
Start: 1608691
End: 1609248
Strand: Reverse
Name: 82544111
Synonym: SBO_1620
Alternate gene names: NA
Gene position: 1609248-1608691 (Counterclockwise)
Preceding gene: 82544112
Following gene: 82544108
Centisome position: 35.6
GC content: 55.38
Gene sequence:
>558_bases GTGATAAAGTCATCAGACTTGTCAGGGGGCAGTCATACAGAGGCTCACGACTGGGACCGGTGGGGATTTCAGTGCCCAGT ACTCCCCTACACAGCCACCGCTGATGATGTCGCTCCGACGGGTCAGCAAATCTGGCAGGAACTGCAAAGCGGCAAATGGG GTGAGATAGCCCCATTCACTGTGACACCAGAAATGCTGGAAGCGGCCAGAGAGGCCAGACGTCAGGAAATTGAAGCATGG CGCGCAGAACAGGAGGCGAAGCCGTTCACGTTTGAATGGAACGGTCGTATCTGGAATGCTGGTCCCGACTCACTGGGCCG CCTGTCCCCGGTAGTCATGCTGGCAAAATCTGTCGCGGCACAAACACATATGGTGTGGAGCGATGCGGATAATCAGCAGG TGAAACTGTCGATGCCGGAACTGGAAGAACTGGCGGCAGCAATGGTGCAGGCGCAGGTCGATCGCAACGATGAGATTTAT CGCCGTCAGCGTGAAATGAAAGAGGAGCTGAGCGGTCTGGATGATTTGGCTTCAATTCGGGCGTTTGACGTTGAGTAA
Upstream 100 bases:
>100_bases GATATTATTTACAGAATCGTGGCGAGCTCTGTCCGCAACAGATGGGGAGCCCCTGACATTGGCGGGCTGATTATTGCTGC GTACCAGGGAGAAGCTGACG
Downstream 100 bases:
>100_bases TGAATAAGCCGCAACTGGCGGAATCACAGAAGACCGCTTTGCTTACCGAAGCGGAGTCTGTCATCCGGCCGCGGGGGCGT GCTGTCAGGCTGAACAGGGA
Product: tail component of prophage
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 185; Mature: 185
Protein sequence:
>185_residues MIKSSDLSGGSHTEAHDWDRWGFQCPVLPYTATADDVAPTGQQIWQELQSGKWGEIAPFTVTPEMLEAAREARRQEIEAW RAEQEAKPFTFEWNGRIWNAGPDSLGRLSPVVMLAKSVAAQTHMVWSDADNQQVKLSMPELEELAAAMVQAQVDRNDEIY RRQREMKEELSGLDDLASIRAFDVE
Sequences:
>Translated_185_residues MIKSSDLSGGSHTEAHDWDRWGFQCPVLPYTATADDVAPTGQQIWQELQSGKWGEIAPFTVTPEMLEAAREARRQEIEAW RAEQEAKPFTFEWNGRIWNAGPDSLGRLSPVVMLAKSVAAQTHMVWSDADNQQVKLSMPELEELAAAMVQAQVDRNDEIY RRQREMKEELSGLDDLASIRAFDVE >Mature_185_residues MIKSSDLSGGSHTEAHDWDRWGFQCPVLPYTATADDVAPTGQQIWQELQSGKWGEIAPFTVTPEMLEAAREARRQEIEAW RAEQEAKPFTFEWNGRIWNAGPDSLGRLSPVVMLAKSVAAQTHMVWSDADNQQVKLSMPELEELAAAMVQAQVDRNDEIY RRQREMKEELSGLDDLASIRAFDVE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20934; Mature: 20934
Theoretical pI: Translated: 4.31; Mature: 4.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIKSSDLSGGSHTEAHDWDRWGFQCPVLPYTATADDVAPTGQQIWQELQSGKWGEIAPFT CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCE VTPEMLEAAREARRQEIEAWRAEQEAKPFTFEWNGRIWNAGPDSLGRLSPVVMLAKSVAA ECHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEEECCCCCCHHHHHHHHHHHHHHHH QTHMVWSDADNQQVKLSMPELEELAAAMVQAQVDRNDEIYRRQREMKEELSGLDDLASIR HHHHEECCCCCCEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHH AFDVE HCCCC >Mature Secondary Structure MIKSSDLSGGSHTEAHDWDRWGFQCPVLPYTATADDVAPTGQQIWQELQSGKWGEIAPFT CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCE VTPEMLEAAREARRQEIEAWRAEQEAKPFTFEWNGRIWNAGPDSLGRLSPVVMLAKSVAA ECHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEEECCCCCCHHHHHHHHHHHHHHHH QTHMVWSDADNQQVKLSMPELEELAAAMVQAQVDRNDEIYRRQREMKEELSGLDDLASIR HHHHEECCCCCCEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHH AFDVE HCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA