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The map label for this gene is yddW [H]

Identifier: 82544058

GI number: 82544058

Start: 1558078

End: 1559397

Strand: Direct

Name: yddW [H]

Synonym: SBO_1565

Alternate gene names: 82544058

Gene position: 1558078-1559397 (Clockwise)

Preceding gene: 82544057

Following gene: 82544059

Centisome position: 34.47

GC content: 51.82

Gene sequence:

>1320_bases
ATGGATATCTGCTCCCGAAACAAGAAATTAACGATTAGAAGACCAGCGATACTGGTTGCATTGGCACTTTTACTGTGTAG
TTGTAAAAGCACGCCTCCAGAGTCCATGGTGACACCACCAGCAGGTTCAAAGCCACCAGCCACGACGCAACAATCGTCAC
AACCGATGCGTGGCATCTGGCTGGCCACGGTTTCTCGCCTCGACTGGCCACCGGTTTCCTCGGTTAACATTAGTAATCCC
ACCAGCCGAGCCCGTGTACAACAACAGGCGATGATCGACAAACTGGATCATCTGCAACGTCTCGGTATAAACACGGTCTT
TTTCCAGGTCAAGCCGGACGGTACCGCCCTGTGGCCATCAAAAATTTTGCCGTGGTCCGATCTTATGACCGGTAAGATTG
GTGAAAATCCGGGTTACGATCCGCTGCAATTTATGCTCGACGAAGCCCACAAGCGTGGGATGAAAGTACACGCCTGGTTT
AACCCCTATCGCGTATCGGTTAATACGAAGCCCGGTACTATCAGGGAACTGAATAGCACTCTGTCTCAACAACCGGCGAG
CGTCTATGTGCAACACCGTGACTGGATCAGAACGTCTGGCGATCGCTTTGTCCTCGACCCGGGCATCCCTGAGGTTCAGG
ACTGGATCACATCAATAGTCGCCGAAGTGGTTTCCCGCTATCCGGTAGATGGCGTGCAGTTTGACGACTATTTCTATACG
GAGTCACCGGGTTCACGGCTAAATGATAACGAAACGTACCGTAAATACGGAGGCGCATTTGCGTCAAAAGCAGACTGGCG
GCGCAACAATACTCAGCAGTTAATTACAAAAGTATCGCACACCATTAAAAGCATTAAGCCGGGAGTCGAATTTGGCGTTA
GCCCGGCAGGCGTGTGGCGTAACCGATCACACGATCCGCTCGGTTCCGATACCCGAGGCGCGGCAGCCTATGACGAATCC
TACGCTGACACCCGTCGATGGGTGGAACAAGGATTGCTGGATTACATTGCTCCCCAAATTTACTGGCCGTTCTCACGGAG
TGCCGCGCGTTATGACGTGTTGGCAAAATGGTGGGCGGATGTCGTTAAACCGACCAGGACCCGCCTGTATATCGGTATCG
CCTTCTATAAAGTGGGTGAACCTTCAAAGATAGAGCCAGACTGGATGATTAACGGCGGCGTACCGGAACTGAAAAAGCAG
CTCGATCTTAACGATGCGGTACCAGAAATTAGCGGCACCATCTTGTTCCGTGAGGACTATCTGAATAAACCGCAGACTCA
ACAAGCGGTCAGCTATCTGCAAAGTCGTTGGGGCAGTTAA

Upstream 100 bases:

>100_bases
CGATAATTCATCGCTCCCTTTTTCGTGCTTGCTGTCGTATTGACTTAACCGGGATAAGTACGAGAATGAGCGCACATCTG
TTTACCGGAAACCAGCACAT

Downstream 100 bases:

>100_bases
ACTCCCATGCTTACTTTGTAACAAGCCGGTGCTTTACCCACCGGCTTGTTACACCTTGTGAAATATCCCACTAGTAATCA
TGCTTACATAAGTCAAATTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 439

Protein sequence:

>439_residues
MDICSRNKKLTIRRPAILVALALLLCSCKSTPPESMVTPPAGSKPPATTQQSSQPMRGIWLATVSRLDWPPVSSVNISNP
TSRARVQQQAMIDKLDHLQRLGINTVFFQVKPDGTALWPSKILPWSDLMTGKIGENPGYDPLQFMLDEAHKRGMKVHAWF
NPYRVSVNTKPGTIRELNSTLSQQPASVYVQHRDWIRTSGDRFVLDPGIPEVQDWITSIVAEVVSRYPVDGVQFDDYFYT
ESPGSRLNDNETYRKYGGAFASKADWRRNNTQQLITKVSHTIKSIKPGVEFGVSPAGVWRNRSHDPLGSDTRGAAAYDES
YADTRRWVEQGLLDYIAPQIYWPFSRSAARYDVLAKWWADVVKPTRTRLYIGIAFYKVGEPSKIEPDWMINGGVPELKKQ
LDLNDAVPEISGTILFREDYLNKPQTQQAVSYLQSRWGS

Sequences:

>Translated_439_residues
MDICSRNKKLTIRRPAILVALALLLCSCKSTPPESMVTPPAGSKPPATTQQSSQPMRGIWLATVSRLDWPPVSSVNISNP
TSRARVQQQAMIDKLDHLQRLGINTVFFQVKPDGTALWPSKILPWSDLMTGKIGENPGYDPLQFMLDEAHKRGMKVHAWF
NPYRVSVNTKPGTIRELNSTLSQQPASVYVQHRDWIRTSGDRFVLDPGIPEVQDWITSIVAEVVSRYPVDGVQFDDYFYT
ESPGSRLNDNETYRKYGGAFASKADWRRNNTQQLITKVSHTIKSIKPGVEFGVSPAGVWRNRSHDPLGSDTRGAAAYDES
YADTRRWVEQGLLDYIAPQIYWPFSRSAARYDVLAKWWADVVKPTRTRLYIGIAFYKVGEPSKIEPDWMINGGVPELKKQ
LDLNDAVPEISGTILFREDYLNKPQTQQAVSYLQSRWGS
>Mature_439_residues
MDICSRNKKLTIRRPAILVALALLLCSCKSTPPESMVTPPAGSKPPATTQQSSQPMRGIWLATVSRLDWPPVSSVNISNP
TSRARVQQQAMIDKLDHLQRLGINTVFFQVKPDGTALWPSKILPWSDLMTGKIGENPGYDPLQFMLDEAHKRGMKVHAWF
NPYRVSVNTKPGTIRELNSTLSQQPASVYVQHRDWIRTSGDRFVLDPGIPEVQDWITSIVAEVVSRYPVDGVQFDDYFYT
ESPGSRLNDNETYRKYGGAFASKADWRRNNTQQLITKVSHTIKSIKPGVEFGVSPAGVWRNRSHDPLGSDTRGAAAYDES
YADTRRWVEQGLLDYIAPQIYWPFSRSAARYDVLAKWWADVVKPTRTRLYIGIAFYKVGEPSKIEPDWMINGGVPELKKQ
LDLNDAVPEISGTILFREDYLNKPQTQQAVSYLQSRWGS

Specific function: Unknown

COG id: COG1649

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0748 family [H]

Homologues:

Organism=Escherichia coli, GI1787767, Length=439, Percent_Identity=99.7722095671982, Blast_Score=904, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003790
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF02638 DUF187 [H]

EC number: NA

Molecular weight: Translated: 49605; Mature: 49605

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDICSRNKKLTIRRPAILVALALLLCSCKSTPPESMVTPPAGSKPPATTQQSSQPMRGIW
CCCCCCCCEEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
LATVSRLDWPPVSSVNISNPTSRARVQQQAMIDKLDHLQRLGINTVFFQVKPDGTALWPS
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEECCC
KILPWSDLMTGKIGENPGYDPLQFMLDEAHKRGMKVHAWFNPYRVSVNTKPGTIRELNST
CCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECEEEEEEECCCCHHHHHHHH
LSQQPASVYVQHRDWIRTSGDRFVLDPGIPEVQDWITSIVAEVVSRYPVDGVQFDDYFYT
HHCCCHHEEEEHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEECCEEEE
ESPGSRLNDNETYRKYGGAFASKADWRRNNTQQLITKVSHTIKSIKPGVEFGVSPAGVWR
CCCCCCCCCCHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCHHHCCCCHHHCC
NRSHDPLGSDTRGAAAYDESYADTRRWVEQGLLDYIAPQIYWPFSRSAARYDVLAKWWAD
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHH
VVKPTRTRLYIGIAFYKVGEPSKIEPDWMINGGVPELKKQLDLNDAVPEISGTILFREDY
HHCCCCEEEEEEEEEEECCCCCCCCCCEEECCCCHHHHHHCCCCCCCCCCCCEEEEEHHH
LNKPQTQQAVSYLQSRWGS
CCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDICSRNKKLTIRRPAILVALALLLCSCKSTPPESMVTPPAGSKPPATTQQSSQPMRGIW
CCCCCCCCEEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
LATVSRLDWPPVSSVNISNPTSRARVQQQAMIDKLDHLQRLGINTVFFQVKPDGTALWPS
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEECCC
KILPWSDLMTGKIGENPGYDPLQFMLDEAHKRGMKVHAWFNPYRVSVNTKPGTIRELNST
CCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECEEEEEEECCCCHHHHHHHH
LSQQPASVYVQHRDWIRTSGDRFVLDPGIPEVQDWITSIVAEVVSRYPVDGVQFDDYFYT
HHCCCHHEEEEHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEECCEEEE
ESPGSRLNDNETYRKYGGAFASKADWRRNNTQQLITKVSHTIKSIKPGVEFGVSPAGVWR
CCCCCCCCCCHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCHHHCCCCHHHCC
NRSHDPLGSDTRGAAAYDESYADTRRWVEQGLLDYIAPQIYWPFSRSAARYDVLAKWWAD
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHH
VVKPTRTRLYIGIAFYKVGEPSKIEPDWMINGGVPELKKQLDLNDAVPEISGTILFREDY
HHCCCCEEEEEEEEEEECCCCCCCCCCEEECCCCHHHHHHCCCCCCCCCCCCEEEEEHHH
LNKPQTQQAVSYLQSRWGS
CCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]