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The map label for this gene is ydhJ [H]

Identifier: 82543989

GI number: 82543989

Start: 1468691

End: 1469590

Strand: Reverse

Name: ydhJ [H]

Synonym: SBO_1491

Alternate gene names: 82543989

Gene position: 1469590-1468691 (Counterclockwise)

Preceding gene: 82543991

Following gene: 82543988

Centisome position: 32.51

GC content: 49.67

Gene sequence:

>900_bases
TTGCGTTTGCCTTGCTCTGGCAATACTGATTGCGTGGTAACTATGTCAATTAAAACAATTAAGTATTTCTCAATAATCAT
TGTAGCGATAGTTGCGGTTCTTGCCGGATGGTGGCTGTGGAATTATTACATGCAATCTCCGTGGACACGCGACGGGAAAA
TACGCGCAGAACAGGTTTCTATCACCCCACAGGTGTCGGGACGTATTGTTGAGCTGAATATAAAAGACAACCAACTGGTT
AACGCGGGGGAACTTCTGCTCACGATCGATAAAACGCCCTTTCAGATCGCCGAGCTGAACGCACAGGCTCAGCTGGCGAA
AGCGCAATCTGACCTCGCAAAAGCCAATAACGAAGCGAATCGTCGTCGTCATCTCTCACAAAATTTTATTTTTGCCGAAG
AACTCGATACCGCTAACCTCAATGTTAAAGCGATGCAGGCCAGTGTTAATGCCGCACAGGCGACGCTGAAACAGACACAA
TGGCAACTGGCGCAAACGGAAATTCGCGCCCCGGTGAGTGGATGGGTGACTAACCTCACTACCCGCATCGGCGATTACGC
TGACACCGGGAAACCGCTGTTTGCCCTTGTCGACAGCCACTCGTTTTACGTCATTGGTTATTTTGAAGAAACCAAGTTGC
GCCATATCCGCGAAGGTGCACCAGCACAAATTACCCTCTATAGTGATAACAAAACGTTACAGGGTCACGTTTCCAGTATC
GGTCGGGCGATTTATGATCAGAGCGTTGAAAGTGACTCAAGCCTTATTCCGGATGTGAAACCTAACGTCCCCTGGGTTCG
TCTCGCCCAACTCGTTCCCGTCCGCTTTGCGCTGGATAAAGTTCCAGGCGATGTCACGCTGGTGTCGGGCACCACCTGTA
GCATTGCCGTAGGTCAATAA

Upstream 100 bases:

>100_bases
GATTCGTCATCTGGCTTGTCGTACACCGCCTGCTTCGTGGCTGGATCTACGCCGGTGACATCTGGCATCCCTTGTAAATG
GATTTATCGCTGTTTGCGAT

Downstream 100 bases:

>100_bases
TGAACGCATCGTCATGGTCCTTGCGCAATTTGCCCTGGTTCAGGGCCACGCTGGCGCAATGGCGTTATGCGTTACGCAAT
ACCATTGCCATGTGTCTGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MRLPCSGNTDCVVTMSIKTIKYFSIIIVAIVAVLAGWWLWNYYMQSPWTRDGKIRAEQVSITPQVSGRIVELNIKDNQLV
NAGELLLTIDKTPFQIAELNAQAQLAKAQSDLAKANNEANRRRHLSQNFIFAEELDTANLNVKAMQASVNAAQATLKQTQ
WQLAQTEIRAPVSGWVTNLTTRIGDYADTGKPLFALVDSHSFYVIGYFEETKLRHIREGAPAQITLYSDNKTLQGHVSSI
GRAIYDQSVESDSSLIPDVKPNVPWVRLAQLVPVRFALDKVPGDVTLVSGTTCSIAVGQ

Sequences:

>Translated_299_residues
MRLPCSGNTDCVVTMSIKTIKYFSIIIVAIVAVLAGWWLWNYYMQSPWTRDGKIRAEQVSITPQVSGRIVELNIKDNQLV
NAGELLLTIDKTPFQIAELNAQAQLAKAQSDLAKANNEANRRRHLSQNFIFAEELDTANLNVKAMQASVNAAQATLKQTQ
WQLAQTEIRAPVSGWVTNLTTRIGDYADTGKPLFALVDSHSFYVIGYFEETKLRHIREGAPAQITLYSDNKTLQGHVSSI
GRAIYDQSVESDSSLIPDVKPNVPWVRLAQLVPVRFALDKVPGDVTLVSGTTCSIAVGQ
>Mature_299_residues
MRLPCSGNTDCVVTMSIKTIKYFSIIIVAIVAVLAGWWLWNYYMQSPWTRDGKIRAEQVSITPQVSGRIVELNIKDNQLV
NAGELLLTIDKTPFQIAELNAQAQLAKAQSDLAKANNEANRRRHLSQNFIFAEELDTANLNVKAMQASVNAAQATLKQTQ
WQLAQTEIRAPVSGWVTNLTTRIGDYADTGKPLFALVDSHSFYVIGYFEETKLRHIREGAPAQITLYSDNKTLQGHVSSI
GRAIYDQSVESDSSLIPDVKPNVPWVRLAQLVPVRFALDKVPGDVTLVSGTTCSIAVGQ

Specific function: Unknown

COG id: COG1566

COG function: function code V; Multidrug resistance efflux pump

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]

Homologues:

Organism=Escherichia coli, GI87081951, Length=285, Percent_Identity=97.5438596491228, Blast_Score=571, Evalue=1e-164,
Organism=Escherichia coli, GI1789637, Length=282, Percent_Identity=39.7163120567376, Blast_Score=194, Evalue=6e-51,
Organism=Escherichia coli, GI1790519, Length=293, Percent_Identity=31.740614334471, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1788711, Length=311, Percent_Identity=26.3665594855305, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI1789041, Length=303, Percent_Identity=27.7227722772277, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI87082036, Length=136, Percent_Identity=32.3529411764706, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1790012, Length=269, Percent_Identity=24.1635687732342, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1790024, Length=254, Percent_Identity=24.4094488188976, Blast_Score=71, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006143 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 33060; Mature: 33060

Theoretical pI: Translated: 8.05; Mature: 8.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLPCSGNTDCVVTMSIKTIKYFSIIIVAIVAVLAGWWLWNYYMQSPWTRDGKIRAEQVS
CCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE
ITPQVSGRIVELNIKDNQLVNAGELLLTIDKTPFQIAELNAQAQLAKAQSDLAKANNEAN
ECCCCCCEEEEEEECCCCEECCCCEEEEECCCCCEEEECCHHHHHHHHHHHHHHCCCHHH
RRRHLSQNFIFAEELDTANLNVKAMQASVNAAQATLKQTQWQLAQTEIRAPVSGWVTNLT
HHHHHHHCCEEEECCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
TRIGDYADTGKPLFALVDSHSFYVIGYFEETKLRHIREGAPAQITLYSDNKTLQGHVSSI
HHHCCCCCCCCCEEEEEECCCEEEEEEECHHHHHHHHCCCCEEEEEEECCCCCHHHHHHH
GRAIYDQSVESDSSLIPDVKPNVPWVRLAQLVPVRFALDKVPGDVTLVSGTTCSIAVGQ
HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEEECC
>Mature Secondary Structure
MRLPCSGNTDCVVTMSIKTIKYFSIIIVAIVAVLAGWWLWNYYMQSPWTRDGKIRAEQVS
CCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE
ITPQVSGRIVELNIKDNQLVNAGELLLTIDKTPFQIAELNAQAQLAKAQSDLAKANNEAN
ECCCCCCEEEEEEECCCCEECCCCEEEEECCCCCEEEECCHHHHHHHHHHHHHHCCCHHH
RRRHLSQNFIFAEELDTANLNVKAMQASVNAAQATLKQTQWQLAQTEIRAPVSGWVTNLT
HHHHHHHCCEEEECCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
TRIGDYADTGKPLFALVDSHSFYVIGYFEETKLRHIREGAPAQITLYSDNKTLQGHVSSI
HHHCCCCCCCCCEEEEEECCCEEEEEEECHHHHHHHHCCCCEEEEEEECCCCCHHHHHHH
GRAIYDQSVESDSSLIPDVKPNVPWVRLAQLVPVRFALDKVPGDVTLVSGTTCSIAVGQ
HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]