Click here to switch to the map view.

The map label for this gene is ydhX [H]

Identifier: 82543961

GI number: 82543961

Start: 1438009

End: 1438728

Strand: Direct

Name: ydhX [H]

Synonym: SBO_1461

Alternate gene names: 82543961

Gene position: 1438009-1438728 (Clockwise)

Preceding gene: 82543960

Following gene: 82543962

Centisome position: 31.82

GC content: 49.72

Gene sequence:

>720_bases
ATGTCATGGATAGGGTGGACAGTTGCAGCCACTGCATTAGGGGATAATCAGATGTCCTTCACTCGACGCAAATTTGTTCT
GGGGATGGGAACAGTAATCTTTTTTACTGGTTCTGCGTCTTCTCTGTTAGCGAACACGAGGCAAGAAAAGGAAGTTCGGT
ATGCCATGATTCATGACGAGTCACGGTGCAATGGCTGTAATATTTGCGCCCGCGCATGCCGTAAAACTAACCACGTCCCC
GCTCAGGGAAGCCGTTTATCGATAGCACACATTCCAGTCACCGATAACGACAACGAAACGCAGTATCACTTTTTTCGCCA
GTCATGTCAGCACTGCGAAGATGCTCCGTGCATCGACGTATGCCCGACGGGGGCATCGTGGCGTGATGAGCAGGGGATCG
TGCGGGTAGAAAAATCGCAGTGCATCGGCTGCAGTTATTGCATTGGCGCTTGTCCGTACCAGGTTCGCTACCTTAACCCT
GTCACTAAAGTGGCAGATAAATGTGATTTCTGCGCTGAGTCCCGACTGGAAAAAGGCTTTCCGCCCATTTGCGTCAGCGC
CTGTCCGGAACACGCATTGATCTTTGGTCGCGAAGATAGCCCAGAAATTCAGGCGTGGTTGCAGGATAATAAATACTATC
AATATCAGCTACCTGGTGCCGGAAAACCGCATCTGTATCGCCGGTTCGGTCAACATTTGATTAAAAAGGAAAATGTATGA

Upstream 100 bases:

>100_bases
GTACTTGTTTAGCGAGCGATTTATGACCTATGGCAAGGCTTATGGCTTATGCGAATGGTTCGAGGTAGAGCAGTTTCAGA
ACCCCTGAAATTTCAGGGAG

Downstream 100 bases:

>100_bases
ACCCGTCGCAACATGCTGAACAGTTTCAGAGCCAGTTAGCGAACTATGTGCCACAGTTCACTCCCGAATTTTGGCCGGTG
TGGTTGATCATTGCCGGAGT

Product: oxidoreductase, Fe-S subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 238

Protein sequence:

>239_residues
MSWIGWTVAATALGDNQMSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTNHVP
AQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNP
VTKVADKCDFCAESRLEKGFPPICVSACPEHALIFGREDSPEIQAWLQDNKYYQYQLPGAGKPHLYRRFGQHLIKKENV

Sequences:

>Translated_239_residues
MSWIGWTVAATALGDNQMSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTNHVP
AQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNP
VTKVADKCDFCAESRLEKGFPPICVSACPEHALIFGREDSPEIQAWLQDNKYYQYQLPGAGKPHLYRRFGQHLIKKENV
>Mature_238_residues
SWIGWTVAATALGDNQMSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTNHVPA
QGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPV
TKVADKCDFCAESRLEKGFPPICVSACPEHALIFGREDSPEIQAWLQDNKYYQYQLPGAGKPHLYRRFGQHLIKKENV

Specific function: Unknown

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI226510944, Length=222, Percent_Identity=99.0990990990991, Blast_Score=464, Evalue=1e-132,
Organism=Escherichia coli, GI2367345, Length=213, Percent_Identity=49.7652582159624, Blast_Score=218, Evalue=2e-58,
Organism=Escherichia coli, GI1787122, Length=155, Percent_Identity=38.0645161290323, Blast_Score=97, Evalue=7e-22,
Organism=Escherichia coli, GI1789370, Length=209, Percent_Identity=31.1004784688995, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787872, Length=152, Percent_Identity=38.1578947368421, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1790326, Length=240, Percent_Identity=27.5, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1787749, Length=188, Percent_Identity=30.3191489361702, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1789067, Length=158, Percent_Identity=36.7088607594937, Blast_Score=77, Evalue=7e-16,
Organism=Escherichia coli, GI1787963, Length=151, Percent_Identity=28.476821192053, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI2367245, Length=144, Percent_Identity=36.8055555555556, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1787740, Length=90, Percent_Identity=36.6666666666667, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787478, Length=86, Percent_Identity=37.2093023255814, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1788811, Length=148, Percent_Identity=35.1351351351351, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1789079, Length=172, Percent_Identity=30.2325581395349, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI87082179, Length=89, Percent_Identity=38.2022471910112, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26941; Mature: 26810

Theoretical pI: Translated: 7.88; Mature: 7.88

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
8.4 %Cys+Met (Translated Protein)
6.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
8.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSWIGWTVAATALGDNQMSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDE
CCCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHCHHHHHEEEEEEECC
SRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDV
CCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEE
CPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLEKGF
CCCCCCCCCCCCCEEECCCCCCCHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCC
PPICVSACPEHALIFGREDSPEIQAWLQDNKYYQYQLPGAGKPHLYRRFGQHLIKKENV
CCEEHHCCCCCEEEECCCCCHHHHHEEECCCEEEEECCCCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SWIGWTVAATALGDNQMSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDE
CCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHCHHHHHEEEEEEECC
SRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDV
CCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEE
CPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLEKGF
CCCCCCCCCCCCCEEECCCCCCCHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCC
PPICVSACPEHALIFGREDSPEIQAWLQDNKYYQYQLPGAGKPHLYRRFGQHLIKKENV
CCEEHHCCCCCEEEECCCCCHHHHHEEECCCEEEEECCCCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]