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The map label for this gene is ydiS [H]

Identifier: 82543935

GI number: 82543935

Start: 1407718

End: 1409007

Strand: Reverse

Name: ydiS [H]

Synonym: SBO_1432

Alternate gene names: 82543935

Gene position: 1409007-1407718 (Counterclockwise)

Preceding gene: 82543936

Following gene: 82543934

Centisome position: 31.17

GC content: 54.03

Gene sequence:

>1290_bases
ATGTCGGATGACAAATTTGATGCCATTGTGGTCGGTGCGGACGTTGCTAGTAGCGTTGCCGCACTGGTCATGGCGCGAGC
CGGACTGGATGTCCTGGTGATAGAACGCGGCGACAGTGCCGGATGTAAAAACATGACCGGCGGGCGTCTTTATGCCCACA
CACTTGAAGCAATCATTCCAGGCTTTGCAGTATCAGCGCCGGTAGAACGCAAGGTCACACGCGAGAAAATCTCCTTCTTA
ACCGAAGAAAGCGCCGTTACCCTCGATTTTCACCGCGAGCAACCAGATGTTCCGCAACACGCATCTTATACCGTATTGCG
TAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCACAGTTTATCCCGGGCGTTCGCGTCGATGCGT
TGGTTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCCGGGGATGATATTCTCCAAGCGAATGTGGTGGTTCTAGCTGAT
GGCGTAAACTCGATGCTTGGCCGCTCGCTGGGAATGGTTCCCGCTTCCGATCCGCATCATTACGCTGTTGGTGTTAAAGA
GGTTATTGGCCTCACACCAGAACAGATCAACGATCGCTTTAATATTACGGGCGAGGAAGGTGCCGCCTGGCTGTTTGCCG
GCTCCCCTTCTGACGGCCTGATGGGCGGGGGATTTCTCTATACCAACAAGGATTCCATATCCTTGGGGCTGGTTTGTGGA
TTGGGTGATATCGCCCATGCGCAAAAAAGCGTGCCGCAAATGCTGGAAGATTTTAAACAACACCCCGCCATTCGCCCACT
AATTAGCGGCGGCAAACTGCTTGAATATTCCGCGCATATGGTGCCAGAAGGCGGTCTGGCAATGGTGCCGCAGATGGTTA
ACGATGGCGTGATGATCGTTGGTGACGCCGCAGGCTTCTGCCTGAATTTGGGTTTTACAGTTCGTGGCATGGATTTAGCC
ATTGCATCGGCTCAGGCTGCCGCCACAACGGTGATCGCCGCCAAAGAACGCGAGGATTTCTCCGCCAGCAGTCTGGCGCA
ATACAAACGTGAGCTGGAACAAAGCTGCGTCATGCGCGATATGCAGCATTTCCGCAAGATCCCGGCGCTGATGGAAAACC
CGCGCCTGTTTAGCCAATACTCACGAATGGTCGCCGACATCATGAACGAGATGTTCACCATTGACGGCAAACCAAACCAG
CCGGTACGCAAAATGATCATGGGACACGCGAAGAAAATTGGGCTGATCAACTTGCTGAAAGATGGCATTAAGGGAGCAAC
CGCGCTATGA

Upstream 100 bases:

>100_bases
ATCTACAAAGTCGTCCCTGCCCTGATTAGCCAGTTGAGCCGCTAATTCCCCTTTCAACCACATCTCCCGCTGTAAACGCA
GCGGGAAGGGAGCATAACGC

Downstream 100 bases:

>100_bases
GCCAGAACGCTACGGTTAACGTCGACATCAAATTAGGCGTCAATAAATTCCATGTTGATGAGGGCCACCCGCATATCATT
CTGGCGGCAAATCCCGATAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 429; Mature: 428

Protein sequence:

>429_residues
MSDDKFDAIVVGADVASSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAVSAPVERKVTREKISFL
TEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILQANVVVLAD
GVNSMLGRSLGMVPASDPHHYAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGSPSDGLMGGGFLYTNKDSISLGLVCG
LGDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEYSAHMVPEGGLAMVPQMVNDGVMIVGDAAGFCLNLGFTVRGMDLA
IASAQAAATTVIAAKEREDFSASSLAQYKRELEQSCVMRDMQHFRKIPALMENPRLFSQYSRMVADIMNEMFTIDGKPNQ
PVRKMIMGHAKKIGLINLLKDGIKGATAL

Sequences:

>Translated_429_residues
MSDDKFDAIVVGADVASSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAVSAPVERKVTREKISFL
TEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILQANVVVLAD
GVNSMLGRSLGMVPASDPHHYAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGSPSDGLMGGGFLYTNKDSISLGLVCG
LGDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEYSAHMVPEGGLAMVPQMVNDGVMIVGDAAGFCLNLGFTVRGMDLA
IASAQAAATTVIAAKEREDFSASSLAQYKRELEQSCVMRDMQHFRKIPALMENPRLFSQYSRMVADIMNEMFTIDGKPNQ
PVRKMIMGHAKKIGLINLLKDGIKGATAL
>Mature_428_residues
SDDKFDAIVVGADVASSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAVSAPVERKVTREKISFLT
EESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILQANVVVLADG
VNSMLGRSLGMVPASDPHHYAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGSPSDGLMGGGFLYTNKDSISLGLVCGL
GDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEYSAHMVPEGGLAMVPQMVNDGVMIVGDAAGFCLNLGFTVRGMDLAI
ASAQAAATTVIAAKEREDFSASSLAQYKRELEQSCVMRDMQHFRKIPALMENPRLFSQYSRMVADIMNEMFTIDGKPNQP
VRKMIMGHAKKIGLINLLKDGIKGATAL

Specific function: Probably accepts electrons from ydiQ/ydiR and reduces a quinone [H]

COG id: COG0644

COG function: function code C; Dehydrogenases (flavoproteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ETF-QO/fixC family [H]

Homologues:

Organism=Homo sapiens, GI119703746, Length=400, Percent_Identity=25.75, Blast_Score=112, Evalue=7e-25,
Organism=Escherichia coli, GI1787991, Length=429, Percent_Identity=98.1351981351981, Blast_Score=866, Evalue=0.0,
Organism=Escherichia coli, GI1786227, Length=429, Percent_Identity=60.1398601398601, Blast_Score=524, Evalue=1e-150,
Organism=Escherichia coli, GI87082155, Length=429, Percent_Identity=42.1911421911422, Blast_Score=334, Evalue=7e-93,
Organism=Caenorhabditis elegans, GI25144720, Length=444, Percent_Identity=25.2252252252252, Blast_Score=114, Evalue=8e-26,
Organism=Saccharomyces cerevisiae, GI6324932, Length=418, Percent_Identity=25.1196172248804, Blast_Score=102, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24652256, Length=407, Percent_Identity=26.2899262899263, Blast_Score=114, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002938
- InterPro:   IPR003042 [H]

Pfam domain/function: PF01494 FAD_binding_3 [H]

EC number: 1.5.5.-

Molecular weight: Translated: 46049; Mature: 45917

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDDKFDAIVVGADVASSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIP
CCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHC
GFAVSAPVERKVTREKISFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQ
CCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHCCCHHHHHHHHH
AGAQFIPGVRVDALVREGNKVTGVQAGDDILQANVVVLADGVNSMLGRSLGMVPASDPHH
CCHHCCCCCHHHHHHHCCCEEECCCCCCHHHHCCEEEEECCHHHHHHHHCCCCCCCCCCC
YAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGSPSDGLMGGGFLYTNKDSISLGLVCG
CCCCHHHHHCCCHHHCCCCEEECCCCCCEEEEECCCCCCCCCCEEEEECCCCCEEEEEEC
LGDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEYSAHMVPEGGLAMVPQMVNDGVMIV
CCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCEEEEHHHCCCCCCHHHHHHHHCCCEEEE
GDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAKEREDFSASSLAQYKRELEQSCVMRD
ECCCCEEEECCEEEECCCEEEHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
MQHFRKIPALMENPRLFSQYSRMVADIMNEMFTIDGKPNQPVRKMIMGHAKKIGLINLLK
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHH
DGIKGATAL
HCCCCCCCC
>Mature Secondary Structure 
SDDKFDAIVVGADVASSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIP
CCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHC
GFAVSAPVERKVTREKISFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQ
CCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHCCCHHHHHHHHH
AGAQFIPGVRVDALVREGNKVTGVQAGDDILQANVVVLADGVNSMLGRSLGMVPASDPHH
CCHHCCCCCHHHHHHHCCCEEECCCCCCHHHHCCEEEEECCHHHHHHHHCCCCCCCCCCC
YAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGSPSDGLMGGGFLYTNKDSISLGLVCG
CCCCHHHHHCCCHHHCCCCEEECCCCCCEEEEECCCCCCCCCCEEEEECCCCCEEEEEEC
LGDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEYSAHMVPEGGLAMVPQMVNDGVMIV
CCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCEEEEHHHCCCCCCHHHHHHHHCCCEEEE
GDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAKEREDFSASSLAQYKRELEQSCVMRD
ECCCCEEEECCEEEECCCEEEHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
MQHFRKIPALMENPRLFSQYSRMVADIMNEMFTIDGKPNQPVRKMIMGHAKKIGLINLLK
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHH
DGIKGATAL
HCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]