| Definition | Shigella boydii Sb227, complete genome. |
|---|---|
| Accession | NC_007613 |
| Length | 4,519,823 |
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The map label for this gene is yebT [H]
Identifier: 82543758
GI number: 82543758
Start: 1244160
End: 1246799
Strand: Direct
Name: yebT [H]
Synonym: SBO_1249
Alternate gene names: 82543758
Gene position: 1244160-1246799 (Clockwise)
Preceding gene: 82543757
Following gene: 82543759
Centisome position: 27.53
GC content: 53.18
Gene sequence:
>2640_bases ATGCACATGAGTCAGGAAACGCCCGCTTCGACGACTGAAGCGCAGATTAAAAATAAACGCCGTATCTCACCTTTCTGGCT GCTGCCTTTCATCGCGCTAATGATTGCCGGTTGGCTGATTTGGGACAGTTATCAGGACCGAAGTAATACCGTCACCATCG ACTTTATGTCGGCGGATGGTATTGTCCCGGGCCGTACGCCTGTTCGTTATCAGGGCGTTGAAGTCGGAACAGTGCAGGAT ATCAGCCTCAGCGACGATCTTCGTAAGATTGAAGTCAAGGTCAGCATCAAGTCCGATATGAAAGATGCGCTGCGCGAAGA GACTCAATTCTGGCTGGTGACGCCAAAAGCATCGTTGGCAGGTGTCTCCGGGCTGGACGCCCTCGTCGGTGGGAACTATA TCGGCATGATGCCGGGTACAGGTAAAGAGCAGGATCACTTTGTCGCACTCGATACCCAACCGAAATATCGGCTGAACAAT GGCGATCTGATGATCCACCTGCAAGCCCCCGATCTCGGTTCGCTGAACAGCGGTTCATTGGTCTATTTCCGCAAGATCCC GGTGGGAAAAGTCTACGACTATGCCATCAATCCCAACAAACAAGGCGTGGTGATTGATGTCCTGATCGAGCGGCGTTTTA CCGATCTGGTGAAAAAAGGTAGCCGTTTCTGGAACGTTTCCGGCGTTGATGCCAATGTCAGTATCAGTGGCGCGAAGGTG AAACTGGAAAGCCTGGCGGCACTGGTTAACGGTGCGATTGCCTTCGATTCACCAGAAGAGTCGAAACCTGCCGAGGCGGA AGATACCTTTGGTCTGTATGAAGACCTCGCCCATAGCCAGCGTGGCGTAATAATCAAACTGGAACTGCCGAGTGGGGCCG GATTAACCGCCGACTCGACGCCATTAATGTATCAGGGACTGGAAGTCGGACAGCTAACTAAACTGGATTTAAATCCTGGT GGTAAAGTCACTGGGGAAATGACAGTTGATCCCAGCGTCGTTACCCTGCTTCGTGAAAATACCCGCATCGAATTACGTAA TCCGAAATTATCCCTTAGCGATGCCAATCTCAGCGCCCTGCTGACTGGCAAAACCTTCGAGTTGGTACCCGGCGATGGCG AGCCACGCAAAGAGTTCGTTGTTGTGCCAGGCGAAAAAGCACTGCTGCATGAACCTGATGTTCTGACGCTGACCCTGACC GCGCCGGAAAGTTACGGTATTGATACGGGTCAGCCGCTCATTCTTCACGGCGTGCAGGTAGGCCAGGTTATTGATCGTAA ACTCACCAGCAAAGGCGTTACCTTTACCGTCGCCATCGAGCCTCAGCATCGCGAACTGGTAAAAGGCGATAGCAAATTCG TCGTCAACAGCCGTGTCGACGTGAAGGTGGGGCTGGATGGCGTTGAGTTTCTTGGTGCCAGCGCCTCAGAATGGATTCAC GGCGGGATACGTATTCGGCCAGGCGATAAAGGTGAGATGAAAGCCAGCTATCCACTGTATGCCAATCTGGAAAAAGCGCT GGAGAACAGCCTTAGCGATTTACCCACCACAACCGTGAGTTTGAGTGCAGAGACGCTGCCGGATGTGCAGGCAGGATCGG TAGTGCTGTACCGTAAATTTGAAGTTGGTGAAGTGATTACCGTGCGTCCGCGAGCTAACGCGTTTGATATCGATCTGCAT ATTAAGCCGGAGTATCGCAACCTTCTGACCAGCAATAGCGTGTTCTGGGCAGAAGGCGGGGCGAAAGTTCAGCTGAATGG TAGTGGCCTGACCGTACAGGCATCCCCGCTCTCCAGAGCATTAAAGGGAGCCATTAGCTTCGATAACCTCAGCGGTGCCA GCGCCAGTCAGCGTAAAGGCGACAAACGAATTCTGTATGCTTCCGAAACAGCGGCCCGTGCGGTTAGTGGGCAGATTACG CTTCACGCTTTCGATGCCGGAAAACTGGCGGTCGGGATGCCAATTCGCTATCTCGGTATTGATATCGGGCAAATCCAGAC GCTGGATCTGATTACCGCGCGCAATGAAGTACAGGCAAAGGCGGTGCTCTATCCGGAGTATGTCCAGACCTTCGCCCGCG GCGGTACGCGCTTCTCGGTGGTCACACCGCAAATTTCAGCCACGGGCGTTGAGCATCTAGATACTATCCTCCAGCCGTAT ATCAATGTCGAACCAGGTCGGGGTAATCCTCGCCGTGACTTTGAGTTGCAAGAAGCTACTATTACTGATTCGCGTTACCT GGATGGCTTAAGCATTATTGTCGAAGCACCGGAAGCCGGTTCGTTAGGTATTGGTACGCCTGTGCTGTTCCGTGGTCTGG AAGTAGGTACGGTTACCGGAATGACGCTGGGGACATTGTCAGATCGCGTGATGATTGCGATGCGCATCAGTAAACGCTAT CAACACCTGGTGCGTAACAATTCCGTCTTCTGGTTGGCATCGGGTTACAGTCTGGACTTTGGTCTGACGGGCGGCGTAGT GAAAACCGGCACCTTTAACCAGTTTATCCGTGGCGGCATCGCCTTCGCCACGCCTCCGGGTACGCCACTGGCACCGAAAG CCCAGGAAGGCAAACACTTCCTGTTGCAGGAAAGTGAACCGAAAGAGTGGCGTGAATGGGGAACTGCGCTTCCCAAATAA
Upstream 100 bases:
>100_bases ATCCTCGCTTTTACTATGGGACCGGCTGCGTTTTATTTTGGCGCAGCCGTAATTTTGACTATTCTTGCTGTGGAATGGCT GGACAGCCGCTTACTTTGGG
Downstream 100 bases:
>100_bases TGCCCACTGCTCCGGCGTGCCTGCGCCGGAGCGTTTATGCTAAACTGCGCGCCTGTTTTTTTGCCAGTGGTACATGCTCG TGGCCCAACACACCGTTTAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 879; Mature: 879
Protein sequence:
>879_residues MHMSQETPASTTEAQIKNKRRISPFWLLPFIALMIAGWLIWDSYQDRSNTVTIDFMSADGIVPGRTPVRYQGVEVGTVQD ISLSDDLRKIEVKVSIKSDMKDALREETQFWLVTPKASLAGVSGLDALVGGNYIGMMPGTGKEQDHFVALDTQPKYRLNN GDLMIHLQAPDLGSLNSGSLVYFRKIPVGKVYDYAINPNKQGVVIDVLIERRFTDLVKKGSRFWNVSGVDANVSISGAKV KLESLAALVNGAIAFDSPEESKPAEAEDTFGLYEDLAHSQRGVIIKLELPSGAGLTADSTPLMYQGLEVGQLTKLDLNPG GKVTGEMTVDPSVVTLLRENTRIELRNPKLSLSDANLSALLTGKTFELVPGDGEPRKEFVVVPGEKALLHEPDVLTLTLT APESYGIDTGQPLILHGVQVGQVIDRKLTSKGVTFTVAIEPQHRELVKGDSKFVVNSRVDVKVGLDGVEFLGASASEWIH GGIRIRPGDKGEMKASYPLYANLEKALENSLSDLPTTTVSLSAETLPDVQAGSVVLYRKFEVGEVITVRPRANAFDIDLH IKPEYRNLLTSNSVFWAEGGAKVQLNGSGLTVQASPLSRALKGAISFDNLSGASASQRKGDKRILYASETAARAVSGQIT LHAFDAGKLAVGMPIRYLGIDIGQIQTLDLITARNEVQAKAVLYPEYVQTFARGGTRFSVVTPQISATGVEHLDTILQPY INVEPGRGNPRRDFELQEATITDSRYLDGLSIIVEAPEAGSLGIGTPVLFRGLEVGTVTGMTLGTLSDRVMIAMRISKRY QHLVRNNSVFWLASGYSLDFGLTGGVVKTGTFNQFIRGGIAFATPPGTPLAPKAQEGKHFLLQESEPKEWREWGTALPK
Sequences:
>Translated_879_residues MHMSQETPASTTEAQIKNKRRISPFWLLPFIALMIAGWLIWDSYQDRSNTVTIDFMSADGIVPGRTPVRYQGVEVGTVQD ISLSDDLRKIEVKVSIKSDMKDALREETQFWLVTPKASLAGVSGLDALVGGNYIGMMPGTGKEQDHFVALDTQPKYRLNN GDLMIHLQAPDLGSLNSGSLVYFRKIPVGKVYDYAINPNKQGVVIDVLIERRFTDLVKKGSRFWNVSGVDANVSISGAKV KLESLAALVNGAIAFDSPEESKPAEAEDTFGLYEDLAHSQRGVIIKLELPSGAGLTADSTPLMYQGLEVGQLTKLDLNPG GKVTGEMTVDPSVVTLLRENTRIELRNPKLSLSDANLSALLTGKTFELVPGDGEPRKEFVVVPGEKALLHEPDVLTLTLT APESYGIDTGQPLILHGVQVGQVIDRKLTSKGVTFTVAIEPQHRELVKGDSKFVVNSRVDVKVGLDGVEFLGASASEWIH GGIRIRPGDKGEMKASYPLYANLEKALENSLSDLPTTTVSLSAETLPDVQAGSVVLYRKFEVGEVITVRPRANAFDIDLH IKPEYRNLLTSNSVFWAEGGAKVQLNGSGLTVQASPLSRALKGAISFDNLSGASASQRKGDKRILYASETAARAVSGQIT LHAFDAGKLAVGMPIRYLGIDIGQIQTLDLITARNEVQAKAVLYPEYVQTFARGGTRFSVVTPQISATGVEHLDTILQPY INVEPGRGNPRRDFELQEATITDSRYLDGLSIIVEAPEAGSLGIGTPVLFRGLEVGTVTGMTLGTLSDRVMIAMRISKRY QHLVRNNSVFWLASGYSLDFGLTGGVVKTGTFNQFIRGGIAFATPPGTPLAPKAQEGKHFLLQESEPKEWREWGTALPK >Mature_879_residues MHMSQETPASTTEAQIKNKRRISPFWLLPFIALMIAGWLIWDSYQDRSNTVTIDFMSADGIVPGRTPVRYQGVEVGTVQD ISLSDDLRKIEVKVSIKSDMKDALREETQFWLVTPKASLAGVSGLDALVGGNYIGMMPGTGKEQDHFVALDTQPKYRLNN GDLMIHLQAPDLGSLNSGSLVYFRKIPVGKVYDYAINPNKQGVVIDVLIERRFTDLVKKGSRFWNVSGVDANVSISGAKV KLESLAALVNGAIAFDSPEESKPAEAEDTFGLYEDLAHSQRGVIIKLELPSGAGLTADSTPLMYQGLEVGQLTKLDLNPG GKVTGEMTVDPSVVTLLRENTRIELRNPKLSLSDANLSALLTGKTFELVPGDGEPRKEFVVVPGEKALLHEPDVLTLTLT APESYGIDTGQPLILHGVQVGQVIDRKLTSKGVTFTVAIEPQHRELVKGDSKFVVNSRVDVKVGLDGVEFLGASASEWIH GGIRIRPGDKGEMKASYPLYANLEKALENSLSDLPTTTVSLSAETLPDVQAGSVVLYRKFEVGEVITVRPRANAFDIDLH IKPEYRNLLTSNSVFWAEGGAKVQLNGSGLTVQASPLSRALKGAISFDNLSGASASQRKGDKRILYASETAARAVSGQIT LHAFDAGKLAVGMPIRYLGIDIGQIQTLDLITARNEVQAKAVLYPEYVQTFARGGTRFSVVTPQISATGVEHLDTILQPY INVEPGRGNPRRDFELQEATITDSRYLDGLSIIVEAPEAGSLGIGTPVLFRGLEVGTVTGMTLGTLSDRVMIAMRISKRY QHLVRNNSVFWLASGYSLDFGLTGGVVKTGTFNQFIRGGIAFATPPGTPLAPKAQEGKHFLLQESEPKEWREWGTALPK
Specific function: Unknown
COG id: COG3008
COG function: function code R; Paraquat-inducible protein B
Gene ontology:
Cell location: Membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pqiB family [H]
Homologues:
Organism=Escherichia coli, GI87081984, Length=877, Percent_Identity=98.9737742303307, Blast_Score=1755, Evalue=0.0, Organism=Escherichia coli, GI1787184, Length=267, Percent_Identity=31.4606741573034, Blast_Score=155, Evalue=1e-38,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003399 [H]
Pfam domain/function: PF02470 MCE [H]
EC number: NA
Molecular weight: Translated: 95368; Mature: 95368
Theoretical pI: Translated: 6.24; Mature: 6.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHMSQETPASTTEAQIKNKRRISPFWLLPFIALMIAGWLIWDSYQDRSNTVTIDFMSADG CCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHEECCCCCCCCEEEEEEEECCC IVPGRTPVRYQGVEVGTVQDISLSDDLRKIEVKVSIKSDMKDALREETQFWLVTPKASLA CCCCCCCCEECCEEECEEEECCCCCCCEEEEEEEEEHHHHHHHHHCCCEEEEEECCHHHC GVSGLDALVGGNYIGMMPGTGKEQDHFVALDTQPKYRLNNGDLMIHLQAPDLGSLNSGSL CCCCCHHHHCCCEEEECCCCCCCCCCEEEEECCCCEEECCCCEEEEEECCCCCCCCCCCE VYFRKIPVGKVYDYAINPNKQGVVIDVLIERRFTDLVKKGSRFWNVSGVDANVSISGAKV EEEEECCCCCEEEEEECCCCCCEEEEEEHHHHHHHHHHCCCCEEEEECCCCEEEECCCEE KLESLAALVNGAIAFDSPEESKPAEAEDTFGLYEDLAHSQRGVIIKLELPSGAGLTADST EHHHHHHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCC PLMYQGLEVGQLTKLDLNPGGKVTGEMTVDPSVVTLLRENTRIELRNPKLSLSDANLSAL CCEECCCCCCCEEEEECCCCCEEEEEEEECCCEEEEEECCCEEEEECCEEEECCCCEEEE LTGKTFELVPGDGEPRKEFVVVPGEKALLHEPDVLTLTLTAPESYGIDTGQPLILHGVQV EECCEEEEECCCCCCCCCEEEECCCHHEEECCCEEEEEEECCCCCCCCCCCCEEEECCHH GQVIDRKLTSKGVTFTVAIEPQHRELVKGDSKFVVNSRVDVKVGLDGVEFLGASASEWIH HHHHHHHHHCCCCEEEEEECCCHHHHHCCCCEEEEECEEEEEECCCHHHHHCCCHHHHHC GGIRIRPGDKGEMKASYPLYANLEKALENSLSDLPTTTVSLSAETLPDVQAGSVVLYRKF CCEEECCCCCCCCEECCCHHHHHHHHHHHHHHHCCCEEEEEEHHCCCCCCCCCEEEEEEE EVGEVITVRPRANAFDIDLHIKPEYRNLLTSNSVFWAEGGAKVQLNGSGLTVQASPLSRA CCCCEEEEECCCCEEEEEEEECCHHHHHHCCCCEEEECCCCEEEECCCCEEEECCHHHHH LKGAISFDNLSGASASQRKGDKRILYASETAARAVSGQITLHAFDAGKLAVGMPIRYLGI HHCCEEECCCCCCCCHHCCCCCEEEEECCHHHHHCCCEEEEEEECCCCEEECCCEEEECC DIGQIQTLDLITARNEVQAKAVLYPEYVQTFARGGTRFSVVTPQISATGVEHLDTILQPY CCCCEEEEEEEECCCCCCEEEEECHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHCCC INVEPGRGNPRRDFELQEATITDSRYLDGLSIIVEAPEAGSLGIGTPVLFRGLEVGTVTG EEECCCCCCCCCCCEEEEEEECCCHHCCCEEEEEECCCCCCCCCCCHHHHCCCEEEEECC MTLGTLSDRVMIAMRISKRYQHLVRNNSVFWLASGYSLDFGLTGGVVKTGTFNQFIRGGI EEEECCCCEEEEEEHHHHHHHHHHHCCCEEEEEECCEEEECCCCCEEECCCHHHHHHCCE AFATPPGTPLAPKAQEGKHFLLQESEPKEWREWGTALPK EEECCCCCCCCCCCCCCCEEEEECCCCHHHHHHCCCCCC >Mature Secondary Structure MHMSQETPASTTEAQIKNKRRISPFWLLPFIALMIAGWLIWDSYQDRSNTVTIDFMSADG CCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHEECCCCCCCCEEEEEEEECCC IVPGRTPVRYQGVEVGTVQDISLSDDLRKIEVKVSIKSDMKDALREETQFWLVTPKASLA CCCCCCCCEECCEEECEEEECCCCCCCEEEEEEEEEHHHHHHHHHCCCEEEEEECCHHHC GVSGLDALVGGNYIGMMPGTGKEQDHFVALDTQPKYRLNNGDLMIHLQAPDLGSLNSGSL CCCCCHHHHCCCEEEECCCCCCCCCCEEEEECCCCEEECCCCEEEEEECCCCCCCCCCCE VYFRKIPVGKVYDYAINPNKQGVVIDVLIERRFTDLVKKGSRFWNVSGVDANVSISGAKV EEEEECCCCCEEEEEECCCCCCEEEEEEHHHHHHHHHHCCCCEEEEECCCCEEEECCCEE KLESLAALVNGAIAFDSPEESKPAEAEDTFGLYEDLAHSQRGVIIKLELPSGAGLTADST EHHHHHHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCC PLMYQGLEVGQLTKLDLNPGGKVTGEMTVDPSVVTLLRENTRIELRNPKLSLSDANLSAL CCEECCCCCCCEEEEECCCCCEEEEEEEECCCEEEEEECCCEEEEECCEEEECCCCEEEE LTGKTFELVPGDGEPRKEFVVVPGEKALLHEPDVLTLTLTAPESYGIDTGQPLILHGVQV EECCEEEEECCCCCCCCCEEEECCCHHEEECCCEEEEEEECCCCCCCCCCCCEEEECCHH GQVIDRKLTSKGVTFTVAIEPQHRELVKGDSKFVVNSRVDVKVGLDGVEFLGASASEWIH HHHHHHHHHCCCCEEEEEECCCHHHHHCCCCEEEEECEEEEEECCCHHHHHCCCHHHHHC GGIRIRPGDKGEMKASYPLYANLEKALENSLSDLPTTTVSLSAETLPDVQAGSVVLYRKF CCEEECCCCCCCCEECCCHHHHHHHHHHHHHHHCCCEEEEEEHHCCCCCCCCCEEEEEEE EVGEVITVRPRANAFDIDLHIKPEYRNLLTSNSVFWAEGGAKVQLNGSGLTVQASPLSRA CCCCEEEEECCCCEEEEEEEECCHHHHHHCCCCEEEECCCCEEEECCCCEEEECCHHHHH LKGAISFDNLSGASASQRKGDKRILYASETAARAVSGQITLHAFDAGKLAVGMPIRYLGI HHCCEEECCCCCCCCHHCCCCCEEEEECCHHHHHCCCEEEEEEECCCCEEECCCEEEECC DIGQIQTLDLITARNEVQAKAVLYPEYVQTFARGGTRFSVVTPQISATGVEHLDTILQPY CCCCEEEEEEEECCCCCCEEEEECHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHCCC INVEPGRGNPRRDFELQEATITDSRYLDGLSIIVEAPEAGSLGIGTPVLFRGLEVGTVTG EEECCCCCCCCCCCEEEEEEECCCHHCCCEEEEEECCCCCCCCCCCHHHHCCCEEEEECC MTLGTLSDRVMIAMRISKRYQHLVRNNSVFWLASGYSLDFGLTGGVVKTGTFNQFIRGGI EEEECCCCEEEEEEHHHHHHHHHHHCCCEEEEEECCEEEECCCCCEEECCCHHHHHHCCE AFATPPGTPLAPKAQEGKHFLLQESEPKEWREWGTALPK EEECCCCCCCCCCCCCCCEEEEECCCCHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9097040; 9278503 [H]