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The map label for this gene is pocR [H]

Identifier: 82543724

GI number: 82543724

Start: 1205763

End: 1206689

Strand: Direct

Name: pocR [H]

Synonym: SBO_1208

Alternate gene names: 82543724

Gene position: 1205763-1206689 (Clockwise)

Preceding gene: 82543720

Following gene: 82543726

Centisome position: 26.68

GC content: 44.98

Gene sequence:

>927_bases
TTGGCAGCATTACCGATTTCTGCGGCGACACTTAATTCAGAACTCATTAATAAAATCGCGCAGGATTTTGCGCAGGCGAC
CAGCCTTGCGGTTGTCGTGGTCAATATTCACGGCGATGAAATTTCCGAGCTGTTTAACTTCACTCCATTTTGTCAGATGA
TGCGGCAACACCCTCAGCTAAGCACTCGATGTCGCATGAGCGATCGTTGTGGGGGCCTGGAAGCCTCTAAATCCGATCAG
CCTTGTATTTATCGCTGTCATGCCGGATTAACCGATTTCTCTATTCCACTGGTAATCGCCGGGCATTTAGTCGGTTTTGT
ATTGTGCGGGCAAGTTCGTCTGCGTAATGATTATGTCGATTTGGTCGATATTCTGAATGTCGATGATTGCTGGCAGGCAG
ATCCCGAATTACTTAATGAATTTCGCAAAGTTCCTGAGATGGATTACTCAAGAGTTATGGCCTCTGCTGATTTGTTGAAG
TTGATTGTAGAAAATTGCCTCAAAAAACAACTCAATTTTGTGGTTATTAAAGAGAACAAATCTCAGTCAGATTCGGTGCG
CCAGACTCGTGCGCCTAGTCCCCACGACAATAAAATGAAAAAAGCTTTACGCTATATTGATGCGCATTTATCAGACGATT
TGCGTCTGGAAGATGTCGCCTCGCACGTTTATCTAAGCCCTTATTATTTCAGTAAGTTATTCAAGAAATACCATGGAATC
GGGTTTAATGCGTGGGTAAACCAACAACGGATGGCCAGCGCGCGTGAGTTACTGTGCCATAGTGACTGGAGCATCGCCAG
CATTGCGCGTAATTTAGGTTTTTCGCAAACCAGTTATTTTTGCAAAGTTTTCCGTCAGACTTATCAGGTTACGCCGCAGG
TGTATCGACAGCAAGTGAGTGAAAATGCGGCGATGGAAACGGTATAG

Upstream 100 bases:

>100_bases
TTACGCACCACGCCTTCAGTAGCGGAGCAGGAAGGACATCTGATGGAAATGGAAGCCACGCAAGCACCTTAAAATCACCA
TCATACACTAAATCAGTAAG

Downstream 100 bases:

>100_bases
AGTAAATGCTAAAAAAAGGGAAGGTTTAAATAAACGCTGGAATGAATAATTAACGTTATTTACGTGTTATGGGAAAAGTA
AAATCAGCTCATAACATACG

Product: pdu/cob regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 307

Protein sequence:

>308_residues
MAALPISAATLNSELINKIAQDFAQATSLAVVVVNIHGDEISELFNFTPFCQMMRQHPQLSTRCRMSDRCGGLEASKSDQ
PCIYRCHAGLTDFSIPLVIAGHLVGFVLCGQVRLRNDYVDLVDILNVDDCWQADPELLNEFRKVPEMDYSRVMASADLLK
LIVENCLKKQLNFVVIKENKSQSDSVRQTRAPSPHDNKMKKALRYIDAHLSDDLRLEDVASHVYLSPYYFSKLFKKYHGI
GFNAWVNQQRMASARELLCHSDWSIASIARNLGFSQTSYFCKVFRQTYQVTPQVYRQQVSENAAMETV

Sequences:

>Translated_308_residues
MAALPISAATLNSELINKIAQDFAQATSLAVVVVNIHGDEISELFNFTPFCQMMRQHPQLSTRCRMSDRCGGLEASKSDQ
PCIYRCHAGLTDFSIPLVIAGHLVGFVLCGQVRLRNDYVDLVDILNVDDCWQADPELLNEFRKVPEMDYSRVMASADLLK
LIVENCLKKQLNFVVIKENKSQSDSVRQTRAPSPHDNKMKKALRYIDAHLSDDLRLEDVASHVYLSPYYFSKLFKKYHGI
GFNAWVNQQRMASARELLCHSDWSIASIARNLGFSQTSYFCKVFRQTYQVTPQVYRQQVSENAAMETV
>Mature_307_residues
AALPISAATLNSELINKIAQDFAQATSLAVVVVNIHGDEISELFNFTPFCQMMRQHPQLSTRCRMSDRCGGLEASKSDQP
CIYRCHAGLTDFSIPLVIAGHLVGFVLCGQVRLRNDYVDLVDILNVDDCWQADPELLNEFRKVPEMDYSRVMASADLLKL
IVENCLKKQLNFVVIKENKSQSDSVRQTRAPSPHDNKMKKALRYIDAHLSDDLRLEDVASHVYLSPYYFSKLFKKYHGIG
FNAWVNQQRMASARELLCHSDWSIASIARNLGFSQTSYFCKVFRQTYQVTPQVYRQQVSENAAMETV

Specific function: Positive regulatory protein of pdu and cob operons [H]

COG id: COG4936

COG function: function code TK; Predicted sensor domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790391, Length=99, Percent_Identity=39.3939393939394, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1786251, Length=109, Percent_Identity=36.697247706422, Blast_Score=78, Evalue=9e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR018771 [H]

Pfam domain/function: PF10114 Hist_Kin_Sens; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 35000; Mature: 34869

Theoretical pI: Translated: 7.45; Mature: 7.45

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAALPISAATLNSELINKIAQDFAQATSLAVVVVNIHGDEISELFNFTPFCQMMRQHPQL
CCCCCCHHHHHHHHHHHHHHHHHHHHHCEEEEEEEECCHHHHHHHCCCHHHHHHHHCCCH
STRCRMSDRCGGLEASKSDQPCIYRCHAGLTDFSIPLVIAGHLVGFVLCGQVRLRNDYVD
HHHHCCHHHCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHH
LVDILNVDDCWQADPELLNEFRKVPEMDYSRVMASADLLKLIVENCLKKQLNFVVIKENK
HHHHCCCCHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCC
SQSDSVRQTRAPSPHDNKMKKALRYIDAHLSDDLRLEDVASHVYLSPYYFSKLFKKYHGI
CCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCC
GFNAWVNQQRMASARELLCHSDWSIASIARNLGFSQTSYFCKVFRQTYQVTPQVYRQQVS
CHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHH
ENAAMETV
HCCCCCCC
>Mature Secondary Structure 
AALPISAATLNSELINKIAQDFAQATSLAVVVVNIHGDEISELFNFTPFCQMMRQHPQL
CCCCCHHHHHHHHHHHHHHHHHHHHHCEEEEEEEECCHHHHHHHCCCHHHHHHHHCCCH
STRCRMSDRCGGLEASKSDQPCIYRCHAGLTDFSIPLVIAGHLVGFVLCGQVRLRNDYVD
HHHHCCHHHCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHH
LVDILNVDDCWQADPELLNEFRKVPEMDYSRVMASADLLKLIVENCLKKQLNFVVIKENK
HHHHCCCCHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCC
SQSDSVRQTRAPSPHDNKMKKALRYIDAHLSDDLRLEDVASHVYLSPYYFSKLFKKYHGI
CCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCC
GFNAWVNQQRMASARELLCHSDWSIASIARNLGFSQTSYFCKVFRQTYQVTPQVYRQQVS
CHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHH
ENAAMETV
HCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8071226; 9352910; 11677609; 8501034 [H]