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The map label for this gene is lomR [H]

Identifier: 82543713

GI number: 82543713

Start: 1191130

End: 1191729

Strand: Reverse

Name: lomR [H]

Synonym: SBO_1197

Alternate gene names: 82543713

Gene position: 1191729-1191130 (Counterclockwise)

Preceding gene: 82543714

Following gene: 82543712

Centisome position: 26.37

GC content: 55.33

Gene sequence:

>600_bases
ATGCGTAAAGTTTGTGCAGCCATTTTGTCCGCAGCCATCTGTCTGGCTGTATCCGGTGCGCCTGCATGGGCGTCTGAACA
TCAGTCCACACTGAGCGCGGGGTATCTTCATGCCCGTACGAACGCTCCCGGCAGCGATAATCTGAACGGGATTAACGTGA
AATACCGTTATGAGTTTACGGACGCGCTGGGGCTGATTACGTCCTTCAGTTATGCCAATGCTGAAGATGAGAAAAAAACG
CACTACAGCGATACCCGCTGGCATGAGGATTCCGTTCGTAACCGCTGGTTCAGCGTAATGGCGGGGCCGTCTGTGCGCGT
GAATGAATGGTTCAGCGCGTATGCGATGGCGGGTGTGGCTTACAGCCGTGTGTCGACTTTCTCCGGGGATTATCTCCGCG
TAACTGACAACAAGGGGAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGG
GGGGCTGGCGTGCAGTTTAACCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGTTCCGGCAGTGGCGACTGGCG
CACTGACGGTTTCATCGTGGGTGTCGGCTATAAATTCTGA

Upstream 100 bases:

>100_bases
AAGAAAGCCACCGCAGGCATCAGTATCAGCTGAATTTTATAACCCATATACGGGCGCCAGAAATGGCGCCTTTTTTATTG
CAGAAAAGCGAGAGGTAATT

Downstream 100 bases:

>100_bases
TTAGCCAGGTAACACAGTGTCATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGACAGTAAAGATTT
CTGGTGTACTGAAAGACGGC

Product: membrane protein precursor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MRKVCAAILSAAICLAVSGAPAWASEHQSTLSAGYLHARTNAPGSDNLNGINVKYRYEFTDALGLITSFSYANAEDEKKT
HYSDTRWHEDSVRNRWFSVMAGPSVRVNEWFSAYAMAGVAYSRVSTFSGDYLRVTDNKGKTHDVLTGSDDGRHSNTSLAW
GAGVQFNPTESVAIDIAYEGSGSGDWRTDGFIVGVGYKF

Sequences:

>Translated_199_residues
MRKVCAAILSAAICLAVSGAPAWASEHQSTLSAGYLHARTNAPGSDNLNGINVKYRYEFTDALGLITSFSYANAEDEKKT
HYSDTRWHEDSVRNRWFSVMAGPSVRVNEWFSAYAMAGVAYSRVSTFSGDYLRVTDNKGKTHDVLTGSDDGRHSNTSLAW
GAGVQFNPTESVAIDIAYEGSGSGDWRTDGFIVGVGYKF
>Mature_199_residues
MRKVCAAILSAAICLAVSGAPAWASEHQSTLSAGYLHARTNAPGSDNLNGINVKYRYEFTDALGLITSFSYANAEDEKKT
HYSDTRWHEDSVRNRWFSVMAGPSVRVNEWFSAYAMAGVAYSRVSTFSGDYLRVTDNKGKTHDVLTGSDDGRHSNTSLAW
GAGVQFNPTESVAIDIAYEGSGSGDWRTDGFIVGVGYKF

Specific function: Unknown

COG id: COG3637

COG function: function code M; Opacity protein and related surface antigens

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ail/ompX/pagC/lom family [H]

Homologues:

Organism=Escherichia coli, GI1787034, Length=201, Percent_Identity=33.8308457711443, Blast_Score=95, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000758
- InterPro:   IPR011250 [H]

Pfam domain/function: PF06316 Ail_Lom [H]

EC number: NA

Molecular weight: Translated: 21657; Mature: 21657

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS00694 ENT_VIR_OMP_1 ; PS00695 ENT_VIR_OMP_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKVCAAILSAAICLAVSGAPAWASEHQSTLSAGYLHARTNAPGSDNLNGINVKYRYEFT
CHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHCEEEEECCCCCCCCCCEEEEEEEEEHH
DALGLITSFSYANAEDEKKTHYSDTRWHEDSVRNRWFSVMAGPSVRVNEWFSAYAMAGVA
HHHHHHHHCCCCCCCCCHHCCCCCCCCCHHHHHHHEEEEECCCCEEHHHHHHHHHHHHHH
YSRVSTFSGDYLRVTDNKGKTHDVLTGSDDGRHSNTSLAWGAGVQFNPTESVAIDIAYEG
HHHHHHCCCCEEEEECCCCCEEEEEECCCCCCCCCCEEEECCCEEECCCCCEEEEEEEEC
SGSGDWRTDGFIVGVGYKF
CCCCCCCCCCEEEEECCCC
>Mature Secondary Structure
MRKVCAAILSAAICLAVSGAPAWASEHQSTLSAGYLHARTNAPGSDNLNGINVKYRYEFT
CHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHCEEEEECCCCCCCCCCEEEEEEEEEHH
DALGLITSFSYANAEDEKKTHYSDTRWHEDSVRNRWFSVMAGPSVRVNEWFSAYAMAGVA
HHHHHHHHCCCCCCCCCHHCCCCCCCCCHHHHHHHEEEEECCCCEEHHHHHHHHHHHHHH
YSRVSTFSGDYLRVTDNKGKTHDVLTGSDDGRHSNTSLAWGAGVQFNPTESVAIDIAYEG
HHHHHHCCCCEEEEECCCCCEEEEEECCCCCCCCCCEEEECCCEEECCCCCEEEEEEEEC
SGSGDWRTDGFIVGVGYKF
CCCCCCCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]