Click here to switch to the map view.

The map label for this gene is yecS [H]

Identifier: 82543614

GI number: 82543614

Start: 1097975

End: 1098643

Strand: Direct

Name: yecS [H]

Synonym: SBO_1088

Alternate gene names: 82543614

Gene position: 1097975-1098643 (Clockwise)

Preceding gene: 161984953

Following gene: 82543615

Centisome position: 24.29

GC content: 53.36

Gene sequence:

>669_bases
ATGCAAGAAAGTATACAACTGGTTATTGATTCCTTGCCGTTCCTGTTGAAAGGGGCTGGGTATACCCTGCAACTCAGTAT
CGGCGGCATGTTTTTTGGCTTACTACTCGGGTTTATTCTCGCGCTGATGCGCCTGTCGCCAATCTGGCCCGTGCGCTGGC
TGGCGCGTTTTTATATCTCTATTTTTCGTGGTACGCCGCTCATCGCACAACTGTTTATGATCTATTACGGCCTGCCGCAG
TTTGGTATCGAATTAGATCCCATTCTGTCAGCAATGATTGGTCTGTCGCTGAACACTGCCGCCTATGCCGCCGAAACGCT
GCGCGCCGCCATTTCTTCTATTGATAAAGGTCAGTGGGAAGCCGCTGCCAGTATTGGTATGACGCCGTGGCAGACCATGC
GTCGCGCGATTTTGCCACAGGCGGCGCGGGTGGCGTTGCCGCCGCTGTCGAACAGCTTTATCAGTCTGGTAAAAGATACG
TCGCTGGCCGCGACAATCCAGGTGCCGGAGCTGTTCCGTCAGGCGCAGTTGATTACCTCGCGCACGCTGGAGGTGTTCAC
CATGTACCTGGCGGCTTCGCTCATCTACTGGATCATGGCGACTGTGTTATCGACGTTGCAGAACCATTTTGAGAATCAAC
TTAATCGCCAGGAGAGAGAACCCAAATGA

Upstream 100 bases:

>100_bases
AGAAACGCTTCAAAGATGAAGGGCCGATTCTGTTTATTCATACCGGCGGCGCGCCTGCGCTGTTCGCCTATCATCCCCAC
GTTTAGCTCCGGGAACGCTC

Downstream 100 bases:

>100_bases
GTGCCATTGAAGTTAAGAACCTGGTGAAAAAATTCCAAGGTCAGACGGTGCTGCACGGTATCGACCTCGAGGTAAAGCCT
GGCGAAGTGGTGGCAATTAT

Product: transport system permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MQESIQLVIDSLPFLLKGAGYTLQLSIGGMFFGLLLGFILALMRLSPIWPVRWLARFYISIFRGTPLIAQLFMIYYGLPQ
FGIELDPILSAMIGLSLNTAAYAAETLRAAISSIDKGQWEAAASIGMTPWQTMRRAILPQAARVALPPLSNSFISLVKDT
SLAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWIMATVLSTLQNHFENQLNRQEREPK

Sequences:

>Translated_222_residues
MQESIQLVIDSLPFLLKGAGYTLQLSIGGMFFGLLLGFILALMRLSPIWPVRWLARFYISIFRGTPLIAQLFMIYYGLPQ
FGIELDPILSAMIGLSLNTAAYAAETLRAAISSIDKGQWEAAASIGMTPWQTMRRAILPQAARVALPPLSNSFISLVKDT
SLAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWIMATVLSTLQNHFENQLNRQEREPK
>Mature_222_residues
MQESIQLVIDSLPFLLKGAGYTLQLSIGGMFFGLLLGFILALMRLSPIWPVRWLARFYISIFRGTPLIAQLFMIYYGLPQ
FGIELDPILSAMIGLSLNTAAYAAETLRAAISSIDKGQWEAAASIGMTPWQTMRRAILPQAARVALPPLSNSFISLVKDT
SLAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWIMATVLSTLQNHFENQLNRQEREPK

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=222, Percent_Identity=99.5495495495496, Blast_Score=440, Evalue=1e-125,
Organism=Escherichia coli, GI1786873, Length=214, Percent_Identity=37.3831775700935, Blast_Score=135, Evalue=2e-33,
Organism=Escherichia coli, GI1787030, Length=217, Percent_Identity=35.4838709677419, Blast_Score=135, Evalue=2e-33,
Organism=Escherichia coli, GI1787086, Length=221, Percent_Identity=33.9366515837104, Blast_Score=117, Evalue=6e-28,
Organism=Escherichia coli, GI1787087, Length=232, Percent_Identity=31.0344827586207, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI87082239, Length=212, Percent_Identity=38.2075471698113, Blast_Score=111, Evalue=4e-26,
Organism=Escherichia coli, GI1786874, Length=198, Percent_Identity=33.3333333333333, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788645, Length=213, Percent_Identity=34.2723004694836, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788646, Length=199, Percent_Identity=30.1507537688442, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI48994930, Length=171, Percent_Identity=35.672514619883, Blast_Score=83, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 24818; Mature: 24818

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQESIQLVIDSLPFLLKGAGYTLQLSIGGMFFGLLLGFILALMRLSPIWPVRWLARFYIS
CCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
IFRGTPLIAQLFMIYYGLPQFGIELDPILSAMIGLSLNTAAYAAETLRAAISSIDKGQWE
HHCCCHHHHHHHHHHHCCCHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHH
AAASIGMTPWQTMRRAILPQAARVALPPLSNSFISLVKDTSLAATIQVPELFRQAQLITS
HHHHCCCCHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHCHHHHEEHHHHHHHHHHHHHH
RTLEVFTMYLAASLIYWIMATVLSTLQNHFENQLNRQEREPK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQESIQLVIDSLPFLLKGAGYTLQLSIGGMFFGLLLGFILALMRLSPIWPVRWLARFYIS
CCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
IFRGTPLIAQLFMIYYGLPQFGIELDPILSAMIGLSLNTAAYAAETLRAAISSIDKGQWE
HHCCCHHHHHHHHHHHCCCHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHH
AAASIGMTPWQTMRRAILPQAARVALPPLSNSFISLVKDTSLAATIQVPELFRQAQLITS
HHHHCCCCHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHCHHHHEEHHHHHHHHHHHHHH
RTLEVFTMYLAASLIYWIMATVLSTLQNHFENQLNRQEREPK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]