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The map label for this gene is fliD [H]

Identifier: 82543608

GI number: 82543608

Start: 1090967

End: 1092373

Strand: Reverse

Name: fliD [H]

Synonym: SBO_1082

Alternate gene names: 82543608

Gene position: 1092373-1090967 (Counterclockwise)

Preceding gene: 82543617

Following gene: 82543607

Centisome position: 24.17

GC content: 52.1

Gene sequence:

>1407_bases
ATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCAATCCTTGATAGCCTCACCGCCGCGCAAAA
AGCGACGCTAACCCCTATTTCAAATCAGCAATCGTCGTTTACCGCTAAACTTAGCGCCTACGGTACGCTGAAAAGCGCGC
TGACGACTTTCCAGACCGCCAATACTGCATTGTCTAAAGCCGATCTTTTTTCCGCCACCAGCACTACCAGCAGCACCACC
GCGTTCAGTGCCACCACTGCGGGTAACGCCATCGCCGGGAAATACACCATCAGCGTCACCCATCTGGCGCAGGCGCAAAC
CCTGACCACGCGCACCACCAGAGATGATACGAAAACGGCGATCGCCACCAGCGACAGCAAACTCACCATTCAACAAGGCG
GCGACAAAGATCCGATTACCATTGATATCAGCGCGGCTAACTCATCGTTAAGCGGGATCCGTGATGCTATCAACAACGCA
AAAGCGGGCGTAAGTGCGAGCATCATTAACGTGGGTAACGGTGAATATCGTCTGTCAGTCACATCAAATGACACCGGCCT
TGATAATGCGATGACACTCTCGGTCAGCGGTGATGATGCGCTACAAAGTTTTATGGGCTATGACGCCAGTGCCAGCAGCA
ACGGTATGGAGGTCTCGGTCGCCGCCAAGAATGCGCAGCTGACGGTCAACAACGTCGCCATTGAGAACAGCAGCAACACC
ATCAGCGACGCGCTGGAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGA
CACCTCCAAAGCGCAAACGGCGATTAAAGACTGGGTGAATGCCTATAACTCGTTAATAGATACCTTCAGTAGCCTGACCA
AATACACCGCCGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATGGCGCACTGCTCGGCGACTCCACGCTGCGGACG
ATTCAGACGCAGTTGAAGTCGATGCTGAGTAATACCGTCAGTTCTTCCAGCTATAAAACGCTGGCGCAGATTGGTATCAC
GACCGATCCCAGCGATGGCAAACTGGAACTGGATGCCGACAAACTCACCGCTGCACTGAAAAAAGATGCCAGCGGCGTAG
GTGCATTGATTGTTGGCGATGGTAAAAAAACCGGCATCACGACCACCATCGGCAGCAACCTGACCAGTTGGCTTTCGACA
ACGGGCATTATTAAAGCCGCTACCGATGGCGTTAGTAAGACCCTGAATAAGTTAACTAAAGACTACAACGCCGCCAGCGA
TCGCATTGATGCGCAGGTCGCGCGCTACAAAAAACAATTTACCCAACTGGACGTTTTAATGACCTCGTTAAACAGCACCA
GCAGCTACTTAACGCAGCAGTTCGAAAACAACAGTAATTCCAAGTAA

Upstream 100 bases:

>100_bases
ATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGGCCAATAACCCCGGTATTCGTTTTACGTGTC
GAAAGATAAAAGGAAATCGC

Downstream 100 bases:

>100_bases
TCATTATTCATCGGGAGACAGGTCATGTACGCGGCAAAAGGCACCCAGGCCTATGCACAAATTGGCGTCGAAAGCGCCGT
AATGAGCGCCAGCCAGCAGC

Product: flagellar capping protein

Products: NA

Alternate protein names: HAP2; Filament cap protein [H]

Number of amino acids: Translated: 468; Mature: 467

Protein sequence:

>468_residues
MASISSLGVGSGLDLSSILDSLTAAQKATLTPISNQQSSFTAKLSAYGTLKSALTTFQTANTALSKADLFSATSTTSSTT
AFSATTAGNAIAGKYTISVTHLAQAQTLTTRTTRDDTKTAIATSDSKLTIQQGGDKDPITIDISAANSSLSGIRDAINNA
KAGVSASIINVGNGEYRLSVTSNDTGLDNAMTLSVSGDDALQSFMGYDASASSNGMEVSVAAKNAQLTVNNVAIENSSNT
ISDALENITLNLNDVTTGNQTLTITQDTSKAQTAIKDWVNAYNSLIDTFSSLTKYTAVDAGADSQSSSNGALLGDSTLRT
IQTQLKSMLSNTVSSSSYKTLAQIGITTDPSDGKLELDADKLTAALKKDASGVGALIVGDGKKTGITTTIGSNLTSWLST
TGIIKAATDGVSKTLNKLTKDYNAASDRIDAQVARYKKQFTQLDVLMTSLNSTSSYLTQQFENNSNSK

Sequences:

>Translated_468_residues
MASISSLGVGSGLDLSSILDSLTAAQKATLTPISNQQSSFTAKLSAYGTLKSALTTFQTANTALSKADLFSATSTTSSTT
AFSATTAGNAIAGKYTISVTHLAQAQTLTTRTTRDDTKTAIATSDSKLTIQQGGDKDPITIDISAANSSLSGIRDAINNA
KAGVSASIINVGNGEYRLSVTSNDTGLDNAMTLSVSGDDALQSFMGYDASASSNGMEVSVAAKNAQLTVNNVAIENSSNT
ISDALENITLNLNDVTTGNQTLTITQDTSKAQTAIKDWVNAYNSLIDTFSSLTKYTAVDAGADSQSSSNGALLGDSTLRT
IQTQLKSMLSNTVSSSSYKTLAQIGITTDPSDGKLELDADKLTAALKKDASGVGALIVGDGKKTGITTTIGSNLTSWLST
TGIIKAATDGVSKTLNKLTKDYNAASDRIDAQVARYKKQFTQLDVLMTSLNSTSSYLTQQFENNSNSK
>Mature_467_residues
ASISSLGVGSGLDLSSILDSLTAAQKATLTPISNQQSSFTAKLSAYGTLKSALTTFQTANTALSKADLFSATSTTSSTTA
FSATTAGNAIAGKYTISVTHLAQAQTLTTRTTRDDTKTAIATSDSKLTIQQGGDKDPITIDISAANSSLSGIRDAINNAK
AGVSASIINVGNGEYRLSVTSNDTGLDNAMTLSVSGDDALQSFMGYDASASSNGMEVSVAAKNAQLTVNNVAIENSSNTI
SDALENITLNLNDVTTGNQTLTITQDTSKAQTAIKDWVNAYNSLIDTFSSLTKYTAVDAGADSQSSSNGALLGDSTLRTI
QTQLKSMLSNTVSSSSYKTLAQIGITTDPSDGKLELDADKLTAALKKDASGVGALIVGDGKKTGITTTIGSNLTSWLSTT
GIIKAATDGVSKTLNKLTKDYNAASDRIDAQVARYKKQFTQLDVLMTSLNSTSSYLTQQFENNSNSK

Specific function: Required for the morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the

COG id: COG1345

COG function: function code N; Flagellar capping protein

Gene ontology:

Cell location: Secreted. Bacterial flagellum [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliD family [H]

Homologues:

Organism=Escherichia coli, GI1788233, Length=468, Percent_Identity=99.5726495726496, Blast_Score=901, Evalue=0.0,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010809
- InterPro:   IPR003481 [H]

Pfam domain/function: PF07195 FliD_C; PF02465 FliD_N [H]

EC number: NA

Molecular weight: Translated: 48456; Mature: 48325

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASISSLGVGSGLDLSSILDSLTAAQKATLTPISNQQSSFTAKLSAYGTLKSALTTFQTA
CCCCCCCCCCCCCCHHHHHHHHHHHHHCEECCCCCCCCCCEEEHHHHHHHHHHHHHHHHH
NTALSKADLFSATSTTSSTTAFSATTAGNAIAGKYTISVTHLAQAQTLTTRTTRDDTKTA
HHHHHHHHHHCCCCCCCCCEEEEECCCCCEEECEEEEEEEEHHHHHHEEECCCCCCCCEE
IATSDSKLTIQQGGDKDPITIDISAANSSLSGIRDAINNAKAGVSASIINVGNGEYRLSV
EEECCCEEEEECCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEEECCCEEEEEE
TSNDTGLDNAMTLSVSGDDALQSFMGYDASASSNGMEVSVAAKNAQLTVNNVAIENSSNT
ECCCCCCCCEEEEEECCHHHHHHHHCCCCCCCCCCEEEEEEECCCEEEEEEEEEECCCCH
ISDALENITLNLNDVTTGNQTLTITQDTSKAQTAIKDWVNAYNSLIDTFSSLTKYTAVDA
HHHHHHHEEEEEEEECCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC
GADSQSSSNGALLGDSTLRTIQTQLKSMLSNTVSSSSYKTLAQIGITTDPSDGKLELDAD
CCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCEECCCCCEEEECHH
KLTAALKKDASGVGALIVGDGKKTGITTTIGSNLTSWLSTTGIIKAATDGVSKTLNKLTK
HHHHHHHHCCCCCEEEEECCCCCCCEEEECCCHHHHHHHHCCEEEEHHHHHHHHHHHHHH
DYNAASDRIDAQVARYKKQFTQLDVLMTSLNSTSSYLTQQFENNSNSK
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
ASISSLGVGSGLDLSSILDSLTAAQKATLTPISNQQSSFTAKLSAYGTLKSALTTFQTA
CCCCCCCCCCCCCHHHHHHHHHHHHHCEECCCCCCCCCCEEEHHHHHHHHHHHHHHHHH
NTALSKADLFSATSTTSSTTAFSATTAGNAIAGKYTISVTHLAQAQTLTTRTTRDDTKTA
HHHHHHHHHHCCCCCCCCCEEEEECCCCCEEECEEEEEEEEHHHHHHEEECCCCCCCCEE
IATSDSKLTIQQGGDKDPITIDISAANSSLSGIRDAINNAKAGVSASIINVGNGEYRLSV
EEECCCEEEEECCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEEECCCEEEEEE
TSNDTGLDNAMTLSVSGDDALQSFMGYDASASSNGMEVSVAAKNAQLTVNNVAIENSSNT
ECCCCCCCCEEEEEECCHHHHHHHHCCCCCCCCCCEEEEEEECCCEEEEEEEEEECCCCH
ISDALENITLNLNDVTTGNQTLTITQDTSKAQTAIKDWVNAYNSLIDTFSSLTKYTAVDA
HHHHHHHEEEEEEEECCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC
GADSQSSSNGALLGDSTLRTIQTQLKSMLSNTVSSSSYKTLAQIGITTDPSDGKLELDAD
CCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCEECCCCCEEEECHH
KLTAALKKDASGVGALIVGDGKKTGITTTIGSNLTSWLSTTGIIKAATDGVSKTLNKLTK
HHHHHHHHCCCCCEEEEECCCCCCCEEEECCCHHHHHHHHCCEEEEHHHHHHHHHHHHHH
DYNAASDRIDAQVARYKKQFTQLDVLMTSLNSTSSYLTQQFENNSNSK
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1527488; 9097040; 9278503; 2659972; 6305924 [H]