| Definition | Shigella boydii Sb227, complete genome. |
|---|---|
| Accession | NC_007613 |
| Length | 4,519,823 |
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The map label for this gene is fliF [H]
Identifier: 82543597
GI number: 82543597
Start: 1080776
End: 1082434
Strand: Reverse
Name: fliF [H]
Synonym: SBO_1070
Alternate gene names: 82543597
Gene position: 1082434-1080776 (Counterclockwise)
Preceding gene: 82543599
Following gene: 82543595
Centisome position: 23.95
GC content: 54.73
Gene sequence:
>1659_bases ATGAATGCGACTGCAGCCCAGACAAAATCTCTTGAGTGGCTTAATCGCCTGCGTGCGAATCCGAAAATTCCATTGATTGT TGCCGGTTCCGCGGCAGTGGCGGTCATGGTCGCACTGATCCTGTGGGCGAAAGCCCCCGACTACCGCACATTATTCAGCA ATCTTTCCGATCAGGATGGTGGCGCAATTGTCAGCCAACTGACGCAAATGAATATTCCTTACCGCTTCAGCGAAGCCAGC GGCGCTATTGAAGTTCCGGCAGATAAAGTTCACGAGCTGCGTCTGCGCCTGGCGCAACAAGGTTTGCCCAAAGGCGGCGC GGTCGGTTTCGAACTACTCGATCAGGAAAAGTTTGGTATCAGCCAGTTCAGCGAACAGGTGAATTATCAGCGGGCGCTGG AAGGCGAGCTTTCTCGTACCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCT TTATTCGTCCGTGAACAAAAATCCCCTTCTGCATCGGTGACGGTAAATCTATTACCCGGCCGCGCACTCGATGAAGGGCA AATTAGCGCCATTGTACATCTGGTTTCCAGCGCGGTTGCTGGTCTGCCGCCGGGGAACGTCACGCTGGTGGATCAGGGTG GACATCTGTTAACCCTGTCCAATACCAGCGGGCGCGATCTTAATGACGCTCAGTTGAAATATGCCAGCGATGTCGAAGGC CGGATTCAGCGGCGTATTGAAGCGATCCTGTCGCCAATTGTTGGTAACGGTAATATTCACGCCCAGGTCACGGCGCAACT GGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGCTTCGTTCACGCC AGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGCGTACCGGGGGCGTTGTCGAATCAACCGGCACCTGCG AATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGCGGGCC GCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATG TGCAACGTCTGTCAGTCGCGGTAGTGGTAAATTACAAAACCTTGCCAGACGGTAAACCATTGCCTCTCAGCAACGAACAG ATGAAGCAAATTGAAGATCTGACCCGCGAGGCGATGGGCTTTTCTGAAAAACGCGGTGACTCGCTCAATGTCGTTAACTC GCCGTTCAATAGCAGTGACGAAAGCGGCGGAGAACTGCCGTTCTGGCAACAGCAAGCGTTTATCGATCAGTTGCTGGCTG CCGGTCGCTGGTTGCTGGTACTGCTGGTGGCGTGGCTGCTGTGGCGGAAAGCGGTACGCCCGCAGTTAACAAGTCGCGCC GAGGCGATGAAAGCTGTACAGCAACAGGCGCAGGCCCGTGAGGAAGTGGAAGATGCGGTGGAAGTCCGCCTGAGCAAAGA CGAACAACTCCAACAACGACGCGCTAACCAACGTCTGGGGGCAGAAGTCATGAGCCAGCGTATCCGTGAAATGTCTGATA ACGATCCGCGCGTGGTGGCGCTGGTCATTCGCCAGTGGATAAATAACGATCATGAGTAA
Upstream 100 bases:
>100_bases CAAATAATGGCAGCGTCAATTTTTCGAGTTTGCTGACCCGGGAGTGAGTCTTGTTCCACTTTGCCAATAACGCCGTCCAT AATCAGCCACGAGGTGCGCG
Downstream 100 bases:
>100_bases CCTGACAGGCACCGATAAAAGCGTCATCCTGCTGATGACCATTGGCGAAGACCGGGCGGCAGAGGTGTTCAAGCACCTCT CCCAGCGCGAAGTGCAAACC
Product: flagellar MS-ring protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 552; Mature: 552
Protein sequence:
>552_residues MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEAS GAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPS LFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTLSNTSGRDLNDAQLKYASDVEG RIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA NNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGKPLPLSNEQ MKQIEDLTREAMGFSEKRGDSLNVVNSPFNSSDESGGELPFWQQQAFIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTSRA EAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQRLGAEVMSQRIREMSDNDPRVVALVIRQWINNDHE
Sequences:
>Translated_552_residues MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEAS GAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPS LFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTLSNTSGRDLNDAQLKYASDVEG RIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA NNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGKPLPLSNEQ MKQIEDLTREAMGFSEKRGDSLNVVNSPFNSSDESGGELPFWQQQAFIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTSRA EAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQRLGAEVMSQRIREMSDNDPRVVALVIRQWINNDHE >Mature_552_residues MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEAS GAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPS LFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTLSNTSGRDLNDAQLKYASDVEG RIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA NNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGKPLPLSNEQ MKQIEDLTREAMGFSEKRGDSLNVVNSPFNSSDESGGELPFWQQQAFIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTSRA EAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQRLGAEVMSQRIREMSDNDPRVVALVIRQWINNDHE
Specific function: The M ring may be actively involved in energy transduction [H]
COG id: COG1766
COG function: function code NU; Flagellar biosynthesis/type III secretory pathway lipoprotein
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein. Bacterial flagellum basal body [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fliF family [H]
Homologues:
Organism=Escherichia coli, GI1788248, Length=552, Percent_Identity=99.6376811594203, Blast_Score=1116, Evalue=0.0,
Paralogues:
None
Copy number: 10-20 (rich media) [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013556 - InterPro: IPR000067 - InterPro: IPR006182 [H]
Pfam domain/function: PF01514 YscJ_FliF; PF08345 YscJ_FliF_C [H]
EC number: NA
Molecular weight: Translated: 60506; Mature: 60506
Theoretical pI: Translated: 6.74; Mature: 6.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG CCCCHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCC GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGI HHHHHHHHHCCCCEEECCCCCCEECCHHHHHHHHHHHHHCCCCCCCCCHHHHHCCHHCCH SQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPG HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEECCCCCCCEEEEEECCC RALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTLSNTSGRDLNDAQLKYASDVEG CCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEECCCCCCCCCHHHHHHHHHHHH RIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQ HHHHHHHHHHHHHCCCCCEEEEEEEEECCCCHHHHHHHHCCCCCHHHHHHHHHHCCCHHH SGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEV CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCH DRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGKPLPLSNEQMKQIEDLTREAMGFSEKRGD HHHHHHHHCCCCCCEEEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCHHHCCC SLNVVNSPFNSSDESGGELPFWQQQAFIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTSRA CCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHH EAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQRLGAEVMSQRIREMSDNDPRVVA HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH LVIRQWINNDHE HHHHHHHCCCCC >Mature Secondary Structure MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG CCCCHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCC GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGI HHHHHHHHHCCCCEEECCCCCCEECCHHHHHHHHHHHHHCCCCCCCCCHHHHHCCHHCCH SQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPG HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEECCCCCCCEEEEEECCC RALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTLSNTSGRDLNDAQLKYASDVEG CCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEECCCCCCCCCHHHHHHHHHHHH RIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQ HHHHHHHHHHHHHCCCCCEEEEEEEEECCCCHHHHHHHHCCCCCHHHHHHHHHHCCCHHH SGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEV CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCH DRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGKPLPLSNEQMKQIEDLTREAMGFSEKRGD HHHHHHHHCCCCCCEEEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCHHHCCC SLNVVNSPFNSSDESGGELPFWQQQAFIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTSRA CCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHH EAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQRLGAEVMSQRIREMSDNDPRVVA HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH LVIRQWINNDHE HHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9097040; 9278503; 1551848; 8224881 [H]