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The map label for this gene is ompF [H]

Identifier: 82543575

GI number: 82543575

Start: 1057479

End: 1057976

Strand: Reverse

Name: ompF [H]

Synonym: SBO_1041

Alternate gene names: 82543575

Gene position: 1057976-1057479 (Counterclockwise)

Preceding gene: 82543583

Following gene: 82543573

Centisome position: 23.41

GC content: 41.16

Gene sequence:

>498_bases
TTGTCTGTAGACTACAACATCGAAGGTTTTGGTTTTGTAGGTGCATATAGCAAATCTGATCGTACTAATGAACAAGCTGG
TGACGGCTACGGTGATAACGCTGAAGTGTGGTCATTAGCAGCCAAGTATGATGCAAATAATATCTATGCAGCAATGATGT
ACGGTGAAACCCGCAACATGACCGTTTTGGCTAATGATCATTTTGCAAATAAAACCCAAAACTTTGAAGCTGTTGTACAG
TATCAGTTCGACTTCGGTTTACGTCCGTCTTTAGGCTACGTATATTCCAAAGGCAAAGATCTTTATGCTCGTGATGGACA
TAAAGGTGTTGATGCTGACCGCGTAAATTATATCGAAGTTGGTACCTGGTACTACTTCAATAAGAACATGAACGTCTACA
CAGCATACAAATTTAACCTGCTGGATAAAGACGATGCAGCGATTACCGATGCCGCAACTGATGACCAGTTTGCAGTTGGT
ATCATCTACCAGTTCTAA

Upstream 100 bases:

>100_bases
CAATCATCTGTACTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATACTGGTTGTCTGGAG
ATTCAGGGGGCCAGTCTACG

Downstream 100 bases:

>100_bases
TCAGCCAACGCGCCGCGGCGTGTTACTGTAAAACATAACACTAGCCTGAGTTCGGGTAATGCTGCCAACTTACTGATTTA
GTGTATGATGGTGATTTTAA

Product: outer membrane porin protein C precurser

Products: NA

Alternate protein names: Outer membrane protein S3; Porin ompF [H]

Number of amino acids: Translated: 165; Mature: 164

Protein sequence:

>165_residues
MSVDYNIEGFGFVGAYSKSDRTNEQAGDGYGDNAEVWSLAAKYDANNIYAAMMYGETRNMTVLANDHFANKTQNFEAVVQ
YQFDFGLRPSLGYVYSKGKDLYARDGHKGVDADRVNYIEVGTWYYFNKNMNVYTAYKFNLLDKDDAAITDAATDDQFAVG
IIYQF

Sequences:

>Translated_165_residues
MSVDYNIEGFGFVGAYSKSDRTNEQAGDGYGDNAEVWSLAAKYDANNIYAAMMYGETRNMTVLANDHFANKTQNFEAVVQ
YQFDFGLRPSLGYVYSKGKDLYARDGHKGVDADRVNYIEVGTWYYFNKNMNVYTAYKFNLLDKDDAAITDAATDDQFAVG
IIYQF
>Mature_164_residues
SVDYNIEGFGFVGAYSKSDRTNEQAGDGYGDNAEVWSLAAKYDANNIYAAMMYGETRNMTVLANDHFANKTQNFEAVVQY
QFDFGLRPSLGYVYSKGKDLYARDGHKGVDADRVNYIEVGTWYYFNKNMNVYTAYKFNLLDKDDAAITDAATDDQFAVGI
IYQF

Specific function: OmpF is a porin that forms passive diffusion pores which allow small molecular weight hydrophilic materials across the outer membrane. It is also a receptor for the bacteriophage T2 [H]

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

Organism=Escherichia coli, GI1786436, Length=168, Percent_Identity=55.3571428571429, Blast_Score=162, Evalue=1e-41,
Organism=Escherichia coli, GI1787641, Length=176, Percent_Identity=51.1363636363636, Blast_Score=155, Evalue=9e-40,
Organism=Escherichia coli, GI1787160, Length=172, Percent_Identity=52.3255813953488, Blast_Score=152, Evalue=8e-39,
Organism=Escherichia coli, GI1788544, Length=169, Percent_Identity=52.0710059171598, Blast_Score=145, Evalue=9e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001897
- InterPro:   IPR013793
- InterPro:   IPR001702 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 18674; Mature: 18542

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVDYNIEGFGFVGAYSKSDRTNEQAGDGYGDNAEVWSLAAKYDANNIYAAMMYGETRNM
CCEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEECCCCCE
TVLANDHFANKTQNFEAVVQYQFDFGLRPSLGYVYSKGKDLYARDGHKGVDADRVNYIEV
EEEECCCCCCCCCCEEEEEEEEECCCCCCCCCEEEECCCEEEECCCCCCCCCCCEEEEEE
GTWYYFNKNMNVYTAYKFNLLDKDDAAITDAATDDQFAVGIIYQF
EEEEEECCCCCEEEEEEEEEECCCCCEEECCCCCCCEEEEEEEEC
>Mature Secondary Structure 
SVDYNIEGFGFVGAYSKSDRTNEQAGDGYGDNAEVWSLAAKYDANNIYAAMMYGETRNM
CEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEECCCCCE
TVLANDHFANKTQNFEAVVQYQFDFGLRPSLGYVYSKGKDLYARDGHKGVDADRVNYIEV
EEEECCCCCCCCCCEEEEEEEEECCCCCCCCCEEEECCCEEEECCCCCCCCCCCEEEEEE
GTWYYFNKNMNVYTAYKFNLLDKDDAAITDAATDDQFAVGIIYQF
EEEEEECCCCCEEEEEEEEEECCCCCEEECCCCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]