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The map label for this gene is lomR [H]

Identifier: 82543559

GI number: 82543559

Start: 1041488

End: 1042087

Strand: Direct

Name: lomR [H]

Synonym: SBO_1023

Alternate gene names: 82543559

Gene position: 1041488-1042087 (Clockwise)

Preceding gene: 82543558

Following gene: 82543560

Centisome position: 23.04

GC content: 56.33

Gene sequence:

>600_bases
ATGCGTAAAGTTTGTGCAGCCATTTTGTCCGCAGCCATCTGTCTGGCTGTATCCGGTGCGCCTGCATGGGCGTCTGAACA
TCAGTCCACGCTGAGCGCCGGGTATCTTCAGCCCCATACTGATATGCCAGGCAGCGATGACCTGAAGGGCATTAACGTGA
AATACCGTTATGAGTTTACGGACACGTTGGGGCTGGTGACGTCATTCAGCTATGCCAACGCTGAAGATGAGCAAAAAACG
CATTACAGCGATACCCGCTGGCATGAGGATTCCGTGCGTAACCGCTGGTTCAGCGTGATGGCGGGGCCGTCTGTGCGCGT
GAATGAATGGTTCAGCGCGTATGCGATGGCGGGCGTGGCTTACAGCCGTGTGTCGACCTTCTCCGGGGATTATCTCCGCG
TAACTGACAACAAGGGGAAAACGCACGATGTGCTGACCGGGAGTGATGACAACCGCCACAGCAACACGTCTCTGGCGTGG
GGGGCTGGCGTGCAGTTTAACCCGACCGAATCCGTGGCCATTGACCTTGCTTATGAAGGTTCCGGCAGTGGCGACTGGCG
CACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGA

Upstream 100 bases:

>100_bases
TACACTAAATCAGTAAGTTGGCAGCATTACCGAATTTTATAACCCAGATTCGGGCACCAGAAATGGTGCCTTTTTTATTG
CAGAAAAGCGAGAGGTAATT

Downstream 100 bases:

>100_bases
TTAGCCAGGTAACACAGTGTTATGACAGCCCGCTGGTTCAGGCGGGCTTTTTGTGGGGTGAATATGGCAGTAAAGATTTC
AGGTGTACTGAAAGATGGGG

Product: membrane protein precursor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MRKVCAAILSAAICLAVSGAPAWASEHQSTLSAGYLQPHTDMPGSDDLKGINVKYRYEFTDTLGLVTSFSYANAEDEQKT
HYSDTRWHEDSVRNRWFSVMAGPSVRVNEWFSAYAMAGVAYSRVSTFSGDYLRVTDNKGKTHDVLTGSDDNRHSNTSLAW
GAGVQFNPTESVAIDLAYEGSGSGDWRTDGFIVGVGYKF

Sequences:

>Translated_199_residues
MRKVCAAILSAAICLAVSGAPAWASEHQSTLSAGYLQPHTDMPGSDDLKGINVKYRYEFTDTLGLVTSFSYANAEDEQKT
HYSDTRWHEDSVRNRWFSVMAGPSVRVNEWFSAYAMAGVAYSRVSTFSGDYLRVTDNKGKTHDVLTGSDDNRHSNTSLAW
GAGVQFNPTESVAIDLAYEGSGSGDWRTDGFIVGVGYKF
>Mature_199_residues
MRKVCAAILSAAICLAVSGAPAWASEHQSTLSAGYLQPHTDMPGSDDLKGINVKYRYEFTDTLGLVTSFSYANAEDEQKT
HYSDTRWHEDSVRNRWFSVMAGPSVRVNEWFSAYAMAGVAYSRVSTFSGDYLRVTDNKGKTHDVLTGSDDNRHSNTSLAW
GAGVQFNPTESVAIDLAYEGSGSGDWRTDGFIVGVGYKF

Specific function: Unknown

COG id: COG3637

COG function: function code M; Opacity protein and related surface antigens

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ail/ompX/pagC/lom family [H]

Homologues:

Organism=Escherichia coli, GI1787034, Length=201, Percent_Identity=32.8358208955224, Blast_Score=93, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000758
- InterPro:   IPR011250 [H]

Pfam domain/function: PF06316 Ail_Lom [H]

EC number: NA

Molecular weight: Translated: 21804; Mature: 21804

Theoretical pI: Translated: 5.55; Mature: 5.55

Prosite motif: PS00694 ENT_VIR_OMP_1 ; PS00695 ENT_VIR_OMP_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKVCAAILSAAICLAVSGAPAWASEHQSTLSAGYLQPHTDMPGSDDLKGINVKYRYEFT
CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEECEEEEEEEEC
DTLGLVTSFSYANAEDEQKTHYSDTRWHEDSVRNRWFSVMAGPSVRVNEWFSAYAMAGVA
CHHHHHHCCCCCCCCCCHHHCCCCCCCCHHHHHHHEEEEECCCCEEHHHHHHHHHHHHHH
YSRVSTFSGDYLRVTDNKGKTHDVLTGSDDNRHSNTSLAWGAGVQFNPTESVAIDLAYEG
HHHHHHCCCCEEEEECCCCCEEEEEECCCCCCCCCCEEEECCCCEECCCCCEEEEEEECC
SGSGDWRTDGFIVGVGYKF
CCCCCCCCCCEEEEECCCC
>Mature Secondary Structure
MRKVCAAILSAAICLAVSGAPAWASEHQSTLSAGYLQPHTDMPGSDDLKGINVKYRYEFT
CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEECEEEEEEEEC
DTLGLVTSFSYANAEDEQKTHYSDTRWHEDSVRNRWFSVMAGPSVRVNEWFSAYAMAGVA
CHHHHHHCCCCCCCCCCHHHCCCCCCCCHHHHHHHEEEEECCCCEEHHHHHHHHHHHHHH
YSRVSTFSGDYLRVTDNKGKTHDVLTGSDDNRHSNTSLAWGAGVQFNPTESVAIDLAYEG
HHHHHHCCCCEEEEECCCCCEEEEEECCCCCCCCCCEEEECCCCEECCCCCEEEEEEECC
SGSGDWRTDGFIVGVGYKF
CCCCCCCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]