| Definition | Shigella boydii Sb227, complete genome. |
|---|---|
| Accession | NC_007613 |
| Length | 4,519,823 |
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The map label for this gene is yeeZ [H]
Identifier: 82543393
GI number: 82543393
Start: 857853
End: 858677
Strand: Reverse
Name: yeeZ [H]
Synonym: SBO_0842
Alternate gene names: 82543393
Gene position: 858677-857853 (Counterclockwise)
Preceding gene: 161984963
Following gene: 82543392
Centisome position: 19.0
GC content: 51.27
Gene sequence:
>825_bases ATGAAAAAGGTCGCAATTGTCGGGTTAGGGTGGTTAGGCATGCCGCTGGCGATGTCACTTTCAGCGCGAGGCTGGCAAGT CACCGGGAGTAAAACCACACAAGATGGTGTCGAAGCGGCCCGAATGAGTGGCATTGATAGCTATCTGCTTCGCATGGAGC CTGAGTTAGTTTGCGATTCTGACGATCTGGATGCCCTGATGGATGCCGATGCACTGGTCATTACGCTTCCGGCACGTCGT AGCGGCTCCGGCGATGAGTTCTATTTACAAGCGGTACAAGAGTTAGTGGATAGCGCGCTGGCCCATCGTATTCCCCGAAT TATTTTTACCAGCTCAACATCTGTCTATGGCGATGCGCAAGGCATGGTGAAAGAAACTACCCCGCGTAATCCGGTAACCA ACAGTGGACGAGTATTAGAAGAACTCGAAGACTGGCTGCACAATTTACCCGGTACTTCGGTCGATATTCTGCGTCTTGCG GGCCTGGTCGGACCGGGGCGTCATCCCGGACGCTTCTTTGCCGGAAAAACCGCGCCTGATGGTGAACATGGTGTTAATTT AGTCCATTTAGAAGATGTTATTGGCGCTATCACTCTGTTGTTACAGGCACCTAAAGGCGGACACATCTATAATATATGTG CGCCAGCTCACCCTGCGCGTAATGTTTTCTATCCGCAGATGGCCCGTTTACTGGGGCTGGAACCTCCGCAGTTCAGAAAT AGTCTGGACAGCGGCAAAGGTAAGATTATTGATGGCAGTCGGATTTGTAATGAACTGGGATTTGAATACCAGTATCCCGA TCCGCTGGTAATGCCGCTGGAGTAA
Upstream 100 bases:
>100_bases TGTCGTTATCATTATTGAACAGATTCATTCATAGAATGAATTGTCAGTTTTGATACGCTAGCGTAGCCTTATAGATCTAA GGTGTATCAGGAGATAACGG
Downstream 100 bases:
>100_bases ACGATCACGCCAGCAGGACGCCGCATACACTGCAAGGGGGCGTGTATGAAACCACTGCTGGATGTGTTGATGATCCTCGA TGCCTTAGAAAAAGAAGGCA
Product: enzyme of sugar metabolism
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 274; Mature: 274
Protein sequence:
>274_residues MKKVAIVGLGWLGMPLAMSLSARGWQVTGSKTTQDGVEAARMSGIDSYLLRMEPELVCDSDDLDALMDADALVITLPARR SGSGDEFYLQAVQELVDSALAHRIPRIIFTSSTSVYGDAQGMVKETTPRNPVTNSGRVLEELEDWLHNLPGTSVDILRLA GLVGPGRHPGRFFAGKTAPDGEHGVNLVHLEDVIGAITLLLQAPKGGHIYNICAPAHPARNVFYPQMARLLGLEPPQFRN SLDSGKGKIIDGSRICNELGFEYQYPDPLVMPLE
Sequences:
>Translated_274_residues MKKVAIVGLGWLGMPLAMSLSARGWQVTGSKTTQDGVEAARMSGIDSYLLRMEPELVCDSDDLDALMDADALVITLPARR SGSGDEFYLQAVQELVDSALAHRIPRIIFTSSTSVYGDAQGMVKETTPRNPVTNSGRVLEELEDWLHNLPGTSVDILRLA GLVGPGRHPGRFFAGKTAPDGEHGVNLVHLEDVIGAITLLLQAPKGGHIYNICAPAHPARNVFYPQMARLLGLEPPQFRN SLDSGKGKIIDGSRICNELGFEYQYPDPLVMPLE >Mature_274_residues MKKVAIVGLGWLGMPLAMSLSARGWQVTGSKTTQDGVEAARMSGIDSYLLRMEPELVCDSDDLDALMDADALVITLPARR SGSGDEFYLQAVQELVDSALAHRIPRIIFTSSTSVYGDAQGMVKETTPRNPVTNSGRVLEELEDWLHNLPGTSVDILRLA GLVGPGRHPGRFFAGKTAPDGEHGVNLVHLEDVIGAITLLLQAPKGGHIYNICAPAHPARNVFYPQMARLLGLEPPQFRN SLDSGKGKIIDGSRICNELGFEYQYPDPLVMPLE
Specific function: Unknown
COG id: COG0451
COG function: function code MG; Nucleoside-diphosphate-sugar epimerases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1788327, Length=274, Percent_Identity=99.2700729927007, Blast_Score=556, Evalue=1e-160,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001509 - InterPro: IPR016040 [H]
Pfam domain/function: PF01370 Epimerase [H]
EC number: NA
Molecular weight: Translated: 29700; Mature: 29700
Theoretical pI: Translated: 5.13; Mature: 5.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKVAIVGLGWLGMPLAMSLSARGWQVTGSKTTQDGVEAARMSGIDSYLLRMEPELVCDS CCEEEEEECCHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCHHHHHHHCCCCEEECC DDLDALMDADALVITLPARRSGSGDEFYLQAVQELVDSALAHRIPRIIFTSSTSVYGDAQ CCHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCC GMVKETTPRNPVTNSGRVLEELEDWLHNLPGTSVDILRLAGLVGPGRHPGRFFAGKTAPD CCEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCEECCCCCCC GEHGVNLVHLEDVIGAITLLLQAPKGGHIYNICAPAHPARNVFYPQMARLLGLEPPQFRN CCCCEEEEEHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCHHHHH SLDSGKGKIIDGSRICNELGFEYQYPDPLVMPLE HHCCCCCEEECHHHHHHHHCCCEECCCCEEECCC >Mature Secondary Structure MKKVAIVGLGWLGMPLAMSLSARGWQVTGSKTTQDGVEAARMSGIDSYLLRMEPELVCDS CCEEEEEECCHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCHHHHHHHCCCCEEECC DDLDALMDADALVITLPARRSGSGDEFYLQAVQELVDSALAHRIPRIIFTSSTSVYGDAQ CCHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCC GMVKETTPRNPVTNSGRVLEELEDWLHNLPGTSVDILRLAGLVGPGRHPGRFFAGKTAPD CCEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCEECCCCCCC GEHGVNLVHLEDVIGAITLLLQAPKGGHIYNICAPAHPARNVFYPQMARLLGLEPPQFRN CCCCEEEEEHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCHHHHH SLDSGKGKIIDGSRICNELGFEYQYPDPLVMPLE HHCCCCCEEECHHHHHHHHCCCEECCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]